@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VLX4: (2017-11-05 )
MIHAGNAITVQMLADGIAEFRFDLQGESVNKFNRATIEDFKAAIAAVKANNDIKGLVVTSGKSTFIVGADITEFGQNFAQGEKAIVDWLMPVHEIFNSFEDLDLPKVAAINGIALGGGFEMCLVCDYRVMSEAAQVGLPEIKLGIYPGFGGSVRLSRLIGIDNAVEWMAMATPKKPAAALKDGAVDAVVAADKLLDAATDLVKQAISGRLNWKAKRQEKLEAVKLNPLEQMMAFNTAKGAVLAKANPAQYPAPKLLLDSLQAGASLARDEALKAEAEGFAKAAVTPQAEALIGLFINDQVVKKASKQHEKGAHPVNQAAVLGAGIMGGGIAYQAASKGTPIIMKDIGNPQLALGMKEANNLLTKQVERKKMKPAQMGETLARIRPTLSYEEFKEVDIVIEAVTENPKVKEIVLAETEKNVRENTIIASNTSTISITRLAKALQRPENFVGMHFFNPVHMMPLVEVIRGEKTSEEAIATTVVLAQKMGKTPIVVNDCPGFLVNRVLFPYFGAFDLLVKDGADFQQIDNVMSKFGWPMGPAYLIDVVGIDTGVHGAEVMAEGFPDRMKPDYKGAIEAMYEAKRLGQKNDVGFYKYELDKKGKKAKTVDPTAYEVIAPFVTGEKREFDNQEIIDRMMLALCNETARCLEDNIVATASEADMAMIMGIGFPPFRGGPCRYIDQTGVAEYVALCDKYAHLGKAYEAPQMLRDMAANNKKFYG

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_C_7(4KUG)
?
[Raw transfer]




NAI_A_3(1F17)
HCDH_HUMAN
[Raw transfer]




NAI_B_4(1F17)
HCDH_HUMAN
[Raw transfer]




NAD_A_5(4KUG)
?
[Raw transfer]




NAD_E_5(3HDH)
HCDH_PIG
[Raw transfer]




CAA_C_3(1F0Y)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1IL0)
HCDH_HUMAN
[Raw transfer]




3HC_C_3(1F12)
HCDH_HUMAN
[Raw transfer]




24 PsiBlast_CBE 97.0463%-107 - C2 -1WDK - FADB_PSEFR -
23 PsiBlast_CBE 95.8363%-104 * C1 *1WDL - FADB_PSEFR -
22 PsiBlast_CBE 95.6363%-107 - C2 -1WDM - FADB_PSEFR -
2 PsiBlast_PDB 95.5863%-107 - C2 -1WDM - FADB_PSEFR -
112 Fugue 95.2062%-107 - C2 -1WDK - FADB_PSEFR -
21 PsiBlast_CBE 95.1563%-105 - C2 -2D3T - FADB_PSEFR -
1 PsiBlast_PDB 94.2463% -98 - C2 -1WDL - FADB_PSEFR -
121 HHSearch 80.0061% -11 - C2 -1WDL - FADB_PSEFR -
27 PsiBlast_CBE 64.1034% 5 - C2 -4B3H - ? -
5 PsiBlast_PDB 63.7034% 5 - C2 -4B3I - ? -
4 PsiBlast_PDB 63.3634% 6 - C2 -4B3H - ? -
6 PsiBlast_PDB 63.3534% 4 - C2 -4B3J - ? -
26 PsiBlast_CBE 63.2534% 8 - C2 -4B3I - ? -
25 PsiBlast_CBE 63.2534% 8 - C2 -4B3J - ? -
124 HHSearch 61.2035% 22 - C2 -4B3I - ? -
13 PsiBlast_PDB 60.6529% -27 - C2 -5MGB - ECHP_RAT -
14 PsiBlast_PDB 60.6129% -27 - C2 -3ZWB - ECHP_RAT -
11 PsiBlast_PDB 60.5129% -25 - C2 -3ZWC - ECHP_RAT -
8 PsiBlast_PDB 60.4329% -23 - C2 -3ZW8 - ECHP_RAT -
7 PsiBlast_PDB 60.2729% -26 - C2 -2X58 - ECHP_RAT -
20 PsiBlast_PDB 43.1538% -78 - C2 -4KUG 9.8 ?
56 PsiBlast_CBE 32.8235% -0 - C2 -3HDH 9.4 HCDH_PIG