@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VLZ6: (2017-11-05 )
MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSVFPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKLPVYLDMGSYQIDLVPERLRGEMAQFDITDNEGKVIVEQGKRINARHVRQMEAAGLTKLSVPDEYLYERITAEDITLRDGEVIAANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTLRADLTRDREEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQKSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPYRKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMEANVARDSGVCVIANRGGVIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNTCINQNVIVNLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKAQLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGGGSTKRGDKLSEDLLSGLELVDLLEIQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVGQILETHLGMAAKGLGDKIEKMLKEQRTVLELREFLDKIYNKVGGEQEDLDSLTDEEILALAGNLRAGVPLATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD

Atome Classification :

(65 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_R_3(5UP6)
RPOB_ECOLI
[Raw transfer]
-
NACID_R_3(5UPA)
?
[Raw transfer]
-
NACID_G_7(4Q4Z)
RPOB_THET8
[Raw transfer]
-
NACID_I_9(5X22)
?
[Raw transfer]
-
NACID_Z_16(4WQS)
RPOB_THET8
[Raw transfer]
-
NACID_S_18(5X22)
?
[Raw transfer]
-
NACID_I_9(5X21)
?
[Raw transfer]
-
NACID_V_22(5I2D)
RPOB_THET8
[Raw transfer]
-
NACID_K_11(5I2D)
RPOB_THET8
[Raw transfer]
-
NACID_I_13(4WQS)
RPOB_THET8
[Raw transfer]
-
NACID_R_3(5UPC)
RPOB_ECOLI
[Raw transfer]
-
NACID_G_7(5E17)
RPOB_THET8
[Raw transfer]
-
NACID_G_8(5D4E)
RPOB_THET8
[Raw transfer]
-
NACID_R_15(5D4E)
RPOB_THET8
[Raw transfer]
-
NACID_G_7(5E18)
RPOB_THET8
[Raw transfer]
-
NACID_Q_17(3AOH)
RPOB_THET8
[Raw transfer]
-
NACID_X_4(2O5I)
RPOB_THET8
[Raw transfer]
-
NACID_H_7(5UHA)
RPOB_MYCTU
[Raw transfer]
-
NACID_G_1(2O5J)
RPOB_THET8
[Raw transfer]
-
NACID_X_4(2O5J)
RPOB_THET8
[Raw transfer]
-
NACID_G_1(2O5I)
RPOB_THET8
[Raw transfer]
-
NACID_R_17(4G7O)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4Q5S)
RPOB_THET8
[Raw transfer]
-
NACID_R_15(4G7Z)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIO)
RPOB_THET8
[Raw transfer]
-
NACID_R_16(4G7H)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIP)
RPOB_THET8
[Raw transfer]
-
NACID_H_13(4G7Z)
RPOB_THET8
[Raw transfer]
-
NACID_H_7(5UHC)
RPOB_MYCTU
[Raw transfer]
-
NACID_H_8(4OIR)
RPOB_THET8
[Raw transfer]
-
NACID_H_7(5UHD)
RPOB_MYCTU
[Raw transfer]
-
NACID_H_8(4OIQ)
RPOB_THET8
[Raw transfer]
-
NACID_H_7(5UH5)
RPOB_MYCTU
[Raw transfer]
-
NACID_H_7(5UHB)
RPOB_MYCTU
[Raw transfer]
-
NACID_H_7(5UHA)
RPOB_MYCTU
[Raw transfer]
-
NACID_H_7(5UH9)
RPOB_MYCTU
[Raw transfer]
-
NACID_H_8(4OIN)
RPOB_THET8
[Raw transfer]
-
NACID_H_7(5UHG)
RPOB_MYCTU
[Raw transfer]
-
NACID_H_7(5UH6)
RPOB_MYCTU
[Raw transfer]
-
NACID_H_8(4G7O)
RPOB_THET8
[Raw transfer]
-
NACID_H_7(5UHF)
RPOB_MYCTU
[Raw transfer]
-
NACID_H_7(5UHE)
RPOB_MYCTU
[Raw transfer]
-
NACID_H_7(5UH8)
RPOB_MYCTU
[Raw transfer]
-
NACID_H_8(4G7H)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(5VO8)
?
[Raw transfer]
-
37 PsiBlast_CBE 99.1870% 0 - C- -4YLN - RPOB_ECOLI -
35 PsiBlast_CBE 99.1870% 0 - C- -4YLO - RPOB_ECOLI -
33 PsiBlast_CBE 99.1870% 0 - C- -4YLP - RPOB_ECOLI -
20 PsiBlast_PDB 99.1870% 0 - C- -4YLP - RPOB_ECOLI -
19 PsiBlast_PDB 99.1870% 0 - C- -4YLO - RPOB_ECOLI -
18 PsiBlast_PDB 99.1870% 0 - C- -4YLN - RPOB_ECOLI -
13 PsiBlast_PDB 72.9670% 33 - C5 -4MEY - RPOB_ECOLI -
12 PsiBlast_PDB 72.9170% 32 - C5 -4MEX - RPOB_ECOLI -
25 PsiBlast_CBE 72.2170% 36 - C5 -5IPL - RPOB_ECOLI -
4 PsiBlast_PDB 72.0870% 33 - C5 -4JKR - ? -
17 PsiBlast_PDB 71.9570% 36 - C5 -4YG2 - RPOB_ECOLI -
11 PsiBlast_PDB 71.9270% 35 - C5 -4LLG - ? -
46 PsiBlast_CBE 71.8870% 35 - C5 -4XSX - RPOB_ECOLI -
29 PsiBlast_CBE 71.8570% 35 - C5 -4ZH3 - RPOB_ECOLI -
27 PsiBlast_CBE 71.8270% 35 - C5 -4ZH4 - RPOB_ECOLI -
24 PsiBlast_CBE 71.8270% 37 - C5 -5UAC - RPOB_ECOLI -
45 PsiBlast_CBE 71.8070% 35 - C5 -4XSX - RPOB_ECOLI -
10 PsiBlast_PDB 71.7870% 36 - C5 -4LK1 - ? -
14 PsiBlast_PDB 71.6970% 37 - C5 -4YFK - RPOB_ECO24 -
42 PsiBlast_CBE 71.6870% 36 - C5 -4XSZ - RPOB_ECOLI -
23 PsiBlast_CBE 71.2170% 34 - C5 -5UP6 Error RPOB_ECOLI
21 PsiBlast_CBE 71.0570% 36 - C5 -5UPC Error RPOB_ECOLI
22 PsiBlast_CBE 70.7070% 36 * C5 *5UPA Error ?
128 HHSearch 57.2056% 36 - C5 -5UHA Error RPOB_MYCTU
79 PsiBlast_CBE 44.7653% 19 - C5 -5D4E 3.6 RPOB_THET8
69 PsiBlast_CBE 44.7653% 15 - C5 -5X22 2.4 ?
76 PsiBlast_CBE 44.6453% 20 - C5 -5I2D 2.1 RPOB_THET8
98 PsiBlast_CBE 44.5353% 17 - C5 -4G7H 3.9 RPOB_THET8
75 PsiBlast_CBE 44.3753% 21 - C5 -5I2D 2.3 RPOB_THET8
97 PsiBlast_CBE 44.3453% 18 - C5 -4G7H 4.2 RPOB_THET8
96 PsiBlast_CBE 44.3053% 18 - C5 -4G7O 5.4 RPOB_THET8
95 PsiBlast_CBE 44.2053% 19 - C5 -4G7O 4.1 RPOB_THET8
88 PsiBlast_CBE 44.0953% 22 - C5 -4OIQ 3.9 RPOB_THET8
70 PsiBlast_CBE 44.0953% 20 - C5 -5X22 2.4 ?
71 PsiBlast_CBE 44.0753% 17 - C5 -5X21 2.4 ?
91 PsiBlast_CBE 43.9253% 19 - C5 -4OIN 4.7 RPOB_THET8
86 PsiBlast_CBE 43.8353% 19 - C5 -4Q4Z Error RPOB_THET8
80 PsiBlast_CBE 43.7853% 20 - C5 -5D4E 3.6 RPOB_THET8
87 PsiBlast_CBE 43.6453% 21 - C5 -4OIR 4.6 RPOB_THET8
78 PsiBlast_CBE 43.6453% 21 - C5 -5E17 2.8 RPOB_THET8
89 PsiBlast_CBE 43.4753% 24 - C5 -4OIP 3.8 RPOB_THET8
90 PsiBlast_CBE 43.2553% 20 - C5 -4OIO 3.6 RPOB_THET8
93 PsiBlast_CBE 43.0953% 21 - C5 -4G7Z 4.0 RPOB_THET8
77 PsiBlast_CBE 42.9153% 22 - C5 -5E18 2.6 RPOB_THET8
72 PsiBlast_CBE 42.8753% 20 - C5 -5VO8 3.4 ?
85 PsiBlast_CBE 42.3753% 21 - C5 -4Q5S 3.9 RPOB_THET8
63 PsiBlast_CBE 42.0358% 46 - C5 -5UH9 4.7 RPOB_MYCTU
94 PsiBlast_CBE 41.9653% 24 - C5 -4G7Z 4.1 RPOB_THET8
59 PsiBlast_CBE 41.7558% 47 - C5 -5UHD 4.4 RPOB_MYCTU
62 PsiBlast_CBE 41.6958% 47 - C5 -5UHA 3.7 RPOB_MYCTU
60 PsiBlast_CBE 41.6758% 47 - C5 -5UHC 3.8 RPOB_MYCTU
61 PsiBlast_CBE 41.6258% 48 - C5 -5UHB 4.6 RPOB_MYCTU
56 PsiBlast_CBE 41.3458% 47 - C5 -5UHG 4.3 RPOB_MYCTU
58 PsiBlast_CBE 41.2458% 47 - C5 -5UHE 4.3 RPOB_MYCTU
65 PsiBlast_CBE 41.2358% 48 - C5 -5UH6 4.7 RPOB_MYCTU
66 PsiBlast_CBE 41.2158% 50 - C5 -5UH5 4.1 RPOB_MYCTU
64 PsiBlast_CBE 40.9458% 48 - C5 -5UH8 4.5 RPOB_MYCTU
57 PsiBlast_CBE 40.4658% 45 - C5 -5UHF 3.9 RPOB_MYCTU
103 PsiBlast_CBE 39.4253% 24 - C5 -3AOH 2.7 RPOB_THET8
108 PsiBlast_CBE 38.8853% 28 - C5 -2O5I 2.1 RPOB_THET8
109 PsiBlast_CBE 38.7653% 27 - C5 -2O5I 2.4 RPOB_THET8
106 PsiBlast_CBE 38.5653% 30 - C5 -2O5J 2.7 RPOB_THET8
83 PsiBlast_CBE 38.4453% 29 - C5 -4WQS 4.2 RPOB_THET8
84 PsiBlast_CBE 37.5553% 31 - C5 -4WQS 3.4 RPOB_THET8
107 PsiBlast_CBE 37.2453% 33 - C5 -2O5J 2.7 RPOB_THET8