@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VM30: (2017-11-05 )
MILNAEQSMVQEMMRNYAQNQLKPTAAHRDKTHEFPAQELKDLGALGAMGMTVPDEWGGAGMDYVSLVLAIEEIAAGDGAISTIVSVQNSLICGITLAYGSEQQKQTYLPKFASGEWLGCFCLTEPHVGSDASAILCKAERDGDHWILNGVKQFITSGKNAQVALVFAVTDKQAGKKGISCFLVPTNTQGYLVTRIEDKMGQHASDTATITLEDCRIPLENLVGQEGEGYKIALSNLAAGRIGIAAQSVGMARAAFDAAVQYANERKAFGVELVQHQAVGFRLADMATQIEAAHQLVLHAATLKDAGLPCLKEASMAKLFASTMAERVCSDAIQIHGGYGYVSDFPVERIYRDVRVSQIYEGASDIQRLVIAREVAQV

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FDA_A_3(4N5F)
?
[Raw transfer]




FDA_A_3(4N5F)
?
[Raw transfer]




FAD_C_3(2DVL)
?
[Raw transfer]




CAA_G_7(1JQI)
ACADS_RAT
[Raw transfer]




CAA_E_5(1JQI)
ACADS_RAT
[Raw transfer]




FAD_D_4(2DVL)
?
[Raw transfer]




COS_A_4(4L1F)
?
[Raw transfer]




FAD_I_9(1JQI)
ACADS_RAT
[Raw transfer]




COS_B_9(4L1F)
?
[Raw transfer]




FDA_B_15(4N5F)
?
[Raw transfer]




115 HHSearch 94.4657% -94 - C2 -4N5F 9.2 ?
1 PsiBlast_PDB 94.3263% -96 - C2 -4U83 - ? -
23 PsiBlast_CBE 93.7363% -95 - C2 -4U83 - ? -
21 PsiBlast_CBE 93.5063% -93 - C2 -4U83 - ? -
22 PsiBlast_CBE 93.0363% -93 - C2 -4U83 - ? -
7 PsiBlast_PDB 91.4949% -92 - C2 -2DVL 8.5 ?
36 PsiBlast_CBE 91.3049% -94 - C2 -2DVL 8.9 ?
117 HHSearch 89.9455% -95 - C2 -4M9A - ? -
31 PsiBlast_CBE 89.5748% -91 - C2 -2VIG - ACADS_HUMAN -
121 HHSearch 89.1348% -90 * C2 *2VIG - ACADS_HUMAN -
34 PsiBlast_CBE 88.5748% -95 - C2 -2VIG - ACADS_HUMAN -
5 PsiBlast_PDB 87.9348% -91 - C2 -2VIG - ACADS_HUMAN -
29 PsiBlast_CBE 87.6848% -93 - C2 -2VIG - ACADS_HUMAN -
120 HHSearch 87.6548% -80 - C2 -1JQI 9.5 ACADS_RAT
2 PsiBlast_PDB 87.3357% -50 - C2 -4N5F 9.2 ?
32 PsiBlast_CBE 86.7348% -90 - C2 -2VIG - ACADS_HUMAN -
27 PsiBlast_CBE 86.3149% -84 - C2 -1JQI 5.7 ACADS_RAT
30 PsiBlast_CBE 86.2448% -91 - C2 -2VIG - ACADS_HUMAN -
35 PsiBlast_CBE 86.0946% -86 - C2 -4L1F 5.9 ?
28 PsiBlast_CBE 85.9948% -89 - C2 -2VIG - ACADS_HUMAN -
4 PsiBlast_PDB 85.6349% -83 - C2 -1JQI 4.0 ACADS_RAT
24 PsiBlast_CBE 81.9957% -52 - C2 -4N5F 7.2 ?