@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VM70: (2017-11-06 )
MSFPQVELNTNKGRIVLELNTEKAPKTAANFLEYVRDGFYDGVIFHRVIDGFMIQGGGFDENFKEKATRDAIENEADNGLSNDVGTIAMARTQAPHSASAQFFINVKNNSFLNHTSKTAQGWGYAVFGKVVEGMDVVEAIKGVRTGNRGYHADVPLENVVIESAKIISE

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LSA_A_3(4N1O)
PPIA_HUMAN
[Raw transfer]




UNU_A_2(4N1N)
PPIA_HUMAN
[Raw transfer]




WM3_A_2(4N1R)
PPIA_HUMAN
[Raw transfer]




E1P_A_2(1W8M)
PPIA_HUMAN
[Raw transfer]




WM2_A_2(4N1Q)
PPIA_HUMAN
[Raw transfer]




GOL_A_2(4DGD)
PPIA_MACMU
[Raw transfer]




1P3_A_2(1W8L)
PPIA_HUMAN
[Raw transfer]




EDO_A_2(3S6M)
?
[Raw transfer]




93B_A_2(5NOV)
?
[Raw transfer]




EDO_A_2(3S6M)
?
[Raw transfer]




PRO_A_3(4N1M)
PPIA_HUMAN
[Raw transfer]




92Z_A_2(5NOS)
?
[Raw transfer]




L60_A_2(5NOU)
?
[Raw transfer]




GLY_A_2(4N1M)
PPIA_HUMAN
[Raw transfer]




WM4_A_3(4N1S)
PPIA_HUMAN
[Raw transfer]




4 PsiBlast_PDB 94.9661% -94 - C6 -2RS4 - PPIB_ECOLI -
3 PsiBlast_PDB 94.0561% -85 - C6 -2NUL - PPIB_ECOLI -
5 PsiBlast_PDB 93.5860% -78 - C6 -1LOP - PPIB_ECOLI -
1 PsiBlast_PDB 93.4366% -67 - C6 -3T1U - ? -
224 HHSearch 93.3466% -65 - C6 -3T1U - ? -
2 PsiBlast_PDB 93.3066% -75 - C6 -3S6M 2.6 ?
217 HHSearch 92.3664% -70 - C6 -3S6M 2.6 ?
222 HHSearch 85.3554% -67 - C6 -1V9T - PPIA_ECOLI -
9 PsiBlast_PDB 85.0953% -68 - C6 -1VAI - PPIA_ECOLI -
8 PsiBlast_PDB 84.8753% -71 - C6 -1V9T - PPIA_ECOLI -
21 PsiBlast_CBE 83.9753% -70 - C6 -1VAI - PPIA_ECOLI -
238 Fugue 83.8457% -23 - C6 -1LOP - PPIB_ECOLI -
7 PsiBlast_PDB 83.8253% -72 - C6 -1J2A - PPIA_ECOLI -
225 HHSearch 75.7954% -64 - C6 -1CLH - PPIA_ECOLI -
6 PsiBlast_PDB 75.5653% -66 - C6 -1CLH - PPIA_ECOLI -
232 HHSearch 70.3132% -44 - C6 -2FU0 - ? -
218 HHSearch 70.3036% -31 - C6 -2X7K - PPIL1_HUMAN -
236 HHSearch 69.8939% -1 - C6 -1W74 - PPIA_MYCTU -
227 HHSearch 69.6836% -31 - C6 -2K7N - PPIL1_HUMAN -
228 HHSearch 67.7834% -31 - C6 -2A2N - -
43 PsiBlast_CBE 40.3835% 53 - C6 -4N1M 3.6 PPIA_HUMAN