@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VM88: (2017-11-06 )
MNIAAQPPVQADQTVYLKDYQKPVFLVESINLDIQVYDDKTIVDSTLVMKRQTAGDLVLLGRDLELQSIQLNGQDLTPAQYSLDSEQLVITDAPDEVILQTQVIIHPETNTQLEGLYKAGDLFVTQNEPEGFRKITFYPDRPDVLSVFTTRVEADKKYPVLLANGNLLETGEVGENRHFAIWQDPTKKPSYLFACVIGDLAVLKDRYTTSEGREVALEIYAIEKDIPKCHIAMEALKHSMRWDEEHYGRAYDLDNYMIVAVSQFNMGAMENKGLNIFNTSCVLADEEYTTDAAIMRVQSVIAHEYFHNWTGNRITCRDWFQLCLKEGLTVFRDQSFSEDLQSAAVQRIDDVAVLKSHQFPEDAGPLSHPPRPDHFVEINNFYTATVYEKGAEINRMMSTLLGKEKFRQGTDEYFRRHDGQAVTVEDWVAALSAGSGVDLSAFLTWYNQPGTPKVEAKGEYDAAAQTYRLSFKQSLKAHPKYPNLKAVPIPVALALFNAKTGEQYTLQSESLFVNGVKDGVYLFDQDEATIEFTGVTEQPVVSLLRNFSAPVNLVFDYTDEELAFLIQHETNGFNQWQATQTLLERILLEDHSADAYIQAIQSTLPELVSRAPLLASRLFDVPTEGYLGSRIDQNYAPADIHVKREALLNRLAQELGSFWKDTYLTLDPDLQKEFSLAMGVRALKNIMLMMMARQGDQSAFELAYEQYQSTGNMSERLGALRVLVWQSAPQAQEALADFYNRFKDEALSLDQWFMIQAANPNATVETIEYLTQHPDYDLTTPNRIRAVSGGLSNNPENTWGFGVAHFINLAEYLDEKNPILGSRLLQVLSRWYTLAEPQRTQVQQALQALQPKVKSKNVSETLNSMLSI

Atome Classification :

(65 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1OT_A_7(4K5O)
AMP1_PLAFQ
[Raw transfer]




BES_A_3(4XMX)
AMPN_ECOLI
[Raw transfer]




TRP_A_5(3B3B)
AMPN_ECOLI
[Raw transfer]




BES_A_3(2HPT)
AMPN_ECOLI
[Raw transfer]




HT7_A_3(4XND)
AMPN_ECOLI
[Raw transfer]




D50_A_3(3Q44)
AMP1_PLAFQ
[Raw transfer]




ARG_A_2(4J3B)
AMP1_PLAFQ
[Raw transfer]




BEY_A_3(3EBI)
AMP1_PLAFQ
[Raw transfer]




PHE_A_5(3B34)
AMPN_ECOLI
[Raw transfer]




4QP_A_2(4ZQT)
?
[Raw transfer]




3FB_A_3(4XNB)
AMPN_ECOLI
[Raw transfer]




PHE_A_5(3B34)
AMPN_ECOLI
[Raw transfer]




S23_A_3(2ZXG)
AMPN_ECOLI
[Raw transfer]




PHE_A_5(3B34)
AMPN_ECOLI
[Raw transfer]




BES_A_3(3EBH)
AMP1_PLAFQ
[Raw transfer]




4QP_A_2(4ZQT)
?
[Raw transfer]




PHE_A_3(4XN5)
AMPN_ECOLI
[Raw transfer]




TYR_A_5(3B37)
AMPN_ECOLI
[Raw transfer]




D66_A_11(3Q43)
AMP1_PLAFQ
[Raw transfer]




4SY_A_2(4ZW6)
AMP1_PLAFQ
[Raw transfer]




1OU_A_7(4K5N)
AMP1_PLAFQ
[Raw transfer]




B3K_A_3(4XNA)
AMPN_ECOLI
[Raw transfer]




BES_A_5(2DQM)
AMPN_ECOLI
[Raw transfer]




SER_A_6(3QJX)
AMPN_ECOLI
[Raw transfer]




1OS_A_7(4K5P)
AMP1_PLAFQ
[Raw transfer]




LEU_A_3(4XO3)
AMPN_ECOLI
[Raw transfer]




LEU_A_3(4XO3)
AMPN_ECOLI
[Raw transfer]




19N_A_3(4K5L)
AMP1_PLAFQ
[Raw transfer]




ALA_A_3(4XN8)
AMPN_ECOLI
[Raw transfer]




LYS_A_5(3B2X)
AMPN_ECOLI
[Raw transfer]




ARG_A_5(3B2P)
AMPN_ECOLI
[Raw transfer]




R5X_A_8(4R5X)
AMP1_PLAFQ
[Raw transfer]




4T2_A_3(4ZW8)
AMP1_PLAFQ
[Raw transfer]




DAB_A_3(3KED)
AMPN_ECOLI
[Raw transfer]




DPP_A_3(4XMT)
AMPN_ECOLI
[Raw transfer]




DAB_A_11(4XMZ)
AMPN_ECOLI
[Raw transfer]




ARG_A_3(4XMV)
AMPN_ECOLI
[Raw transfer]




1OV_A_7(4K5M)
AMP1_PLAFQ
[Raw transfer]




R5T_A_13(4R5T)
AMP1_PLAFQ
[Raw transfer]




4SA_A_3(4ZW5)
AMP1_PLAFQ
[Raw transfer]




LEU_A_3(4XN2)
AMPN_ECOLI
[Raw transfer]




BTJ_A_6(3T8V)
AMP1_PLAFQ
[Raw transfer]




GOL_A_10(3B34)
AMPN_ECOLI
[Raw transfer]




GOL_A_17(4XN4)
AMPN_ECOLI
[Raw transfer]




4SZ_A_3(4ZW7)
AMP1_PLAFQ
[Raw transfer]




4S9_A_2(4ZW3)
AMP1_PLAFQ
[Raw transfer]




4TK_A_3(4ZX3)
AMP1_PLAFQ
[Raw transfer]




R5V_A_3(4R5V)
AMP1_PLAFQ
[Raw transfer]




4TL_A_2(4ZX4)
AMP1_PLAFQ
[Raw transfer]




4TM_A_3(4ZX5)
AMP1_PLAFQ
[Raw transfer]




4U6_A_3(4ZX6)
AMP1_PLAFQ
[Raw transfer]




GLU_A_3(4XO5)
AMPN_ECOLI
[Raw transfer]




DPP_A_3(4XN7)
AMPN_ECOLI
[Raw transfer]




GOL_A_8(3EBG)
AMP1_PLAFQ
[Raw transfer]




BAL_A_3(4XN9)
AMPN_ECOLI
[Raw transfer]




ALA_A_3(4XMU)
AMPN_ECOLI
[Raw transfer]




TOD_A_3(4X2U)
AMP1_PLAFQ
[Raw transfer]




TOD_A_3(4X2U)
AMP1_PLAFQ
[Raw transfer]




GLU_A_3(4XN1)
AMPN_ECOLI
[Raw transfer]




ASP_A_3(4XMW)
AMPN_ECOLI
[Raw transfer]




BB2_A_3(4Q4E)
AMPN_ECOLI
[Raw transfer]




65 Fugue 90.0440% 11 - C3 -3B34 3.5 AMPN_ECOLI
3 PsiBlast_PDB 90.0241% 15 - C3 -2DQM 5.3 AMPN_ECOLI
18 PsiBlast_PDB 89.6441% 16 - C3 -5MFS - AMPN_ECOLI -
19 PsiBlast_PDB 89.3441% 15 - C3 -5MFT - AMPN_ECOLI -
17 PsiBlast_PDB 89.2941% 16 - C3 -5MFR - AMPN_ECOLI -
4 PsiBlast_PDB 89.2841% 16 - C3 -2ZXG 6.0 AMPN_ECOLI
12 PsiBlast_PDB 89.0241% 16 - C3 -3B37 4.0 AMPN_ECOLI
9 PsiBlast_PDB 88.9341% 16 - C3 -3B2P 2.8 AMPN_ECOLI
6 PsiBlast_PDB 88.9241% 16 - C3 -2HPO - AMPN_ECOLI -
11 PsiBlast_PDB 88.8941% 15 - C3 -3B34 3.5 AMPN_ECOLI
30 PsiBlast_CBE 88.7841% 16 - C3 -4XN4 3.1 AMPN_ECOLI
36 PsiBlast_CBE 88.7741% 15 - C3 -4XMZ 3.8 AMPN_ECOLI
2 PsiBlast_PDB 88.7641% 15 - C3 -2DQ6 - AMPN_ECOLI -
24 PsiBlast_CBE 88.6041% 16 - C3 -4XNA 2.8 AMPN_ECOLI
33 PsiBlast_CBE 88.5041% 16 - C3 -4XMV 3.0 AMPN_ECOLI
10 PsiBlast_PDB 88.4741% 16 - C3 -3B2X 2.7 AMPN_ECOLI
21 PsiBlast_CBE 88.4341% 15 - C3 -4XO3 2.8 AMPN_ECOLI
35 PsiBlast_CBE 88.3841% 15 - C3 -4XN1 3.3 AMPN_ECOLI
38 PsiBlast_CBE 88.3341% 17 - C3 -4XMT 4.1 AMPN_ECOLI
29 PsiBlast_CBE 88.3241% 16 - C3 -4XN5 3.1 AMPN_ECOLI
26 PsiBlast_CBE 88.2641% 16 - C3 -4XN8 4.5 AMPN_ECOLI
23 PsiBlast_CBE 88.2341% 16 - C3 -4XNB 4.0 AMPN_ECOLI
20 PsiBlast_PDB 88.0841% 16 - C3 -4XO5 4.7 AMPN_ECOLI
14 PsiBlast_PDB 88.0741% 16 - C3 -3QJX 4.0 AMPN_ECOLI
31 PsiBlast_CBE 87.8641% 16 - C3 -4XN2 2.7 AMPN_ECOLI
32 PsiBlast_CBE 87.7841% 16 - C3 -4XMX 4.1 AMPN_ECOLI
8 PsiBlast_PDB 87.6941% 18 - C3 -3KED 4.3 AMPN_ECOLI
75 HHSearch 87.6741% 18 - C3 -3B34 3.5 AMPN_ECOLI
7 PsiBlast_PDB 87.6741% 17 - C3 -2HPT 5.3 AMPN_ECOLI
22 PsiBlast_CBE 87.6641% 16 - C3 -4XND 5.3 AMPN_ECOLI
27 PsiBlast_CBE 87.6041% 17 - C3 -4XN7 4.1 AMPN_ECOLI
13 PsiBlast_PDB 87.4941% 16 - C3 -3B3B 4.0 AMPN_ECOLI
37 PsiBlast_CBE 87.4141% 16 - C3 -4XMW 3.6 AMPN_ECOLI
15 PsiBlast_PDB 87.3741% 17 - C3 -4Q4E 5.8 AMPN_ECOLI
34 PsiBlast_CBE 86.9741% 17 - C3 -4XMU 4.4 AMPN_ECOLI
25 PsiBlast_CBE 86.6341% 17 - C3 -4XN9 3.8 AMPN_ECOLI
74 HHSearch 82.2841% 30 - C3 -4XO3 2.8 AMPN_ECOLI
78 HHSearch 79.4334% 23 - C3 -4ZQT 4.6 ?
77 HHSearch 78.4534% 26 * C3 *4X2U 4.9 AMP1_PLAFQ
45 PsiBlast_CBE 74.5733% 32 - C3 -4ZW7 6.1 AMP1_PLAFQ
44 PsiBlast_CBE 74.5533% 31 - C3 -4ZW8 6.1 AMP1_PLAFQ
47 PsiBlast_CBE 74.4233% 32 - C3 -4ZW5 6.4 AMP1_PLAFQ
40 PsiBlast_CBE 74.4133% 30 - C3 -4ZX6 6.0 AMP1_PLAFQ
64 PsiBlast_CBE 74.3433% 32 - C3 -3T8V 6.7 AMP1_PLAFQ
62 PsiBlast_CBE 74.1733% 32 - C3 -3EBH 5.6 AMP1_PLAFQ
55 PsiBlast_CBE 74.0733% 31 - C3 -4ZQT 4.6 ?
48 PsiBlast_CBE 74.0733% 31 - C3 -4ZW3 6.1 AMP1_PLAFQ
46 PsiBlast_CBE 74.0233% 31 - C3 -4ZW6 6.4 AMP1_PLAFQ
43 PsiBlast_CBE 73.9633% 31 - C3 -4ZX3 5.4 AMP1_PLAFQ
41 PsiBlast_CBE 73.9433% 32 - C3 -4ZX5 5.3 AMP1_PLAFQ
57 PsiBlast_CBE 73.7233% 33 - C3 -4R5V 6.3 AMP1_PLAFQ
42 PsiBlast_CBE 73.6533% 32 - C3 -4ZX4 5.6 AMP1_PLAFQ
56 PsiBlast_CBE 73.5933% 32 - C3 -4X2U 4.9 AMP1_PLAFQ
58 PsiBlast_CBE 73.4233% 32 - C3 -4R5T 6.6 AMP1_PLAFQ
53 PsiBlast_CBE 73.3033% 33 - C3 -3Q44 7.7 AMP1_PLAFQ
60 PsiBlast_CBE 73.2633% 32 - C3 -4K5O 4.2 AMP1_PLAFQ
61 PsiBlast_CBE 73.1833% 34 - C3 -4K5N 3.6 AMP1_PLAFQ
54 PsiBlast_CBE 72.9533% 33 - C3 -3Q43 6.7 AMP1_PLAFQ
52 PsiBlast_CBE 72.9333% 33 - C3 -4K5L 3.9 AMP1_PLAFQ
49 PsiBlast_CBE 72.8033% 33 - C3 -4R5X 5.9 AMP1_PLAFQ
59 PsiBlast_CBE 72.5233% 32 - C3 -4K5P 3.4 AMP1_PLAFQ
51 PsiBlast_CBE 72.4233% 33 - C3 -4K5M 3.2 AMP1_PLAFQ
63 PsiBlast_CBE 72.3633% 33 - C3 -3EBG 2.1 AMP1_PLAFQ
39 PsiBlast_CBE 72.2033% 32 - C3 -4J3B 3.6 AMP1_PLAFQ
50 PsiBlast_CBE 72.0333% 34 - C3 -3EBI 5.7 AMP1_PLAFQ