@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMA6: (2017-11-07 )
MAKAKFERNKPHVNVGTIGHVDHGKTTLTAAIATICAKTYGGEAKDYSQIDSAPEEKARGITINTSHVEYDSPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPMPQTREHILLSRQVGVPYIIVFLNKCDLVDDEELLELVEMEVRELLSTYDFPGDDTPVIRGSALAALNGEAGPYGEESVLALVAALDSYIPEPERAIDKAFLMPIEDVFSISGRGTVVTGRVEAGIIKVGEEVEIVGIKDTVKTTVTGVEMFRKLLDEGRAGENCGILLRGTKREEVQRGQVLAKPGTIKPHTKFDAEVYVLSKEEGGRHTPFLNGYRPQFYFRTTDVTGAIQLKEGVEMVMPGDNVEMSVELIHPIAMDPGLRFAIREGGRTVGAGVVAKVTA

Atome Classification :

(53 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_2(4LBZ)
EFTU1_THETH
[Raw transfer]




GNP_A_2(4H9G)
EFTU1_THETH
[Raw transfer]




GDP_B_6(1EFC)
EFTU1_ECOLI
[Raw transfer]




GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]




GTP_A_3(3VMF)
EF1A_AERPE
[Raw transfer]




GNP_A_5(4PC6)
?
[Raw transfer]




GNP_A_3(1EXM)
EFTU1_THETH
[Raw transfer]




GNP_A_3(2C77)
EFTU2_THET8
[Raw transfer]




GDP_A_3(1HA3)
EFTU1_THET8
[Raw transfer]




GNP_A_2(4LBV)
EFTU1_THETH
[Raw transfer]




GNP_A_2(4LBW)
EFTU1_THETH
[Raw transfer]




GDP_A_6(1D8T)
EFTU1_ECOLI
[Raw transfer]




GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]




GDP_H_6(1DG1)
EFTU2_ECOLI
[Raw transfer]




GDP_A_3(3U2Q)
?
[Raw transfer]




GNP_B_7(4PC6)
?
[Raw transfer]




GDP_A_5(1EFC)
EFTU1_ECOLI
[Raw transfer]




GDP_A_3(5JBQ)
?
[Raw transfer]




GNP_A_5(1OB2)
EFTU2_ECOLI
[Raw transfer]




GNP_A_3(2BVN)
EFTU2_ECOLI
[Raw transfer]




GDP_K_10(4IW3)
EFTU1_PSEPK
[Raw transfer]




GDP_B_7(3U6K)
?
[Raw transfer]




GNP_A_3(1EFT)
EFTU_THEAQ
[Raw transfer]




GNP_P_9(1B23)
EFTU_THEAQ
[Raw transfer]




GDP_A_5(4ZV4)
EFTU_PSEAE
[Raw transfer]




GDP_G_5(1DG1)
EFTU2_ECOLI
[Raw transfer]




GDP_A_3(1ETU)
EFTU1_ECOLI
[Raw transfer]




GDP_A_3(2FX3)
EFTU1_ECOLI
[Raw transfer]




GNP_A_2(4LC0)
EFTU1_THETH
[Raw transfer]




GDP_B_(1D8T)
EFTU1_ECOLI
[Raw transfer]




GDP_A_5(3U6K)
EFTU1_ECOLI
[Raw transfer]




GDP_A_4(4G5G)
EFTU1_ECOLI
[Raw transfer]




GDP_B_7(4IW3)
EFTU1_PSEPK
[Raw transfer]




GDP_A_7(1TUI)
EFTU_THEAQ
[Raw transfer]




GNP_A_3(4PC7)
EFTU1_ECOLI
[Raw transfer]




GDP_C_9(1TUI)
EFTU_THEAQ
[Raw transfer]




GDP_B_8(1TUI)
EFTU_THEAQ
[Raw transfer]




GDP_A_4(4P3Y)
?
[Raw transfer]




GNP_A_2(4LBY)
EFTU1_THETH
[Raw transfer]




GDP_B_7(4ZV4)
EFTU_PSEAE
[Raw transfer]




G4P_A_5(4ZCM)
TYPA_ECOLI
[Raw transfer]




GDP_G_10(5I4R)
?
[Raw transfer]




G4P_B_9(4ZCM)
TYPA_ECOLI
[Raw transfer]




GCP_A_2(3J25)
TET1_ENTFL
[Raw transfer]




GDP_C_9(5I4R)
?
[Raw transfer]




GCP_A_2(5A9W)
TYPA_ECOLI
[Raw transfer]




GDP_G_10(5I4R)
?
[Raw transfer]




GDP_C_9(5I4R)
?
[Raw transfer]




GNP_C_3(2P8W)

[Raw transfer]




GDP_A_3(1EFM)
EFTU2_ECOLI
[Raw transfer]




TAC_B_8(2HCJ)
EFTU1_ECOUT
[Raw transfer]




TAC_B_8(2HCJ)
EFTU1_ECOUT
[Raw transfer]




35 PsiBlast_CBE 95.2784% -99 - C1 -1D8T 8.7 EFTU1_ECOLI
12 PsiBlast_PDB 95.2085%-101 - C1 -5JBQ 9.2 ?
23 PsiBlast_CBE 94.4284% -99 - C1 -1DG1 7.3 EFTU2_ECOLI
4 PsiBlast_PDB 94.1385% -97 - C1 -4G5G 8.4 EFTU1_ECOLI
5 PsiBlast_PDB 93.9584%-104 - C1 -1DG1 8.4 EFTU2_ECOLI
14 PsiBlast_PDB 93.9084%-100 - C1 -1EFC 8.9 EFTU1_ECOLI
2 PsiBlast_PDB 93.8085%-102 - C1 -3U6K 7.3 EFTU1_ECOLI
22 PsiBlast_CBE 93.1585% -99 - C1 -3U6K 7.0 ?
29 PsiBlast_CBE 92.8384% -95 - C1 -1EFC 8.5 EFTU1_ECOLI
34 PsiBlast_CBE 92.7684%-105 - C1 -1D8T 8.9 EFTU1_ECOLI
3 PsiBlast_PDB 92.0985%-104 - C1 -3U2Q 7.2 ?
32 PsiBlast_CBE 92.0784% -98 - C1 -2FX3 7.0 EFTU1_ECOLI
6 PsiBlast_PDB 91.9285%-106 - C1 -4P3Y 9.5 ?
25 PsiBlast_CBE 91.6485%-115 - C1 -4PC3 - EFTU1_ECOLI -
26 PsiBlast_CBE 91.5385%-113 - C1 -4PC2 - ? -
24 PsiBlast_CBE 90.7285%-114 - C1 -4PC6 6.9 ?
8 PsiBlast_PDB 90.0785%-118 - C1 -4PC2 - ? -
9 PsiBlast_PDB 89.8285%-119 - C1 -4PC3 - EFTU1_ECOLI -
7 PsiBlast_PDB 89.6785%-118 - C1 -4PC1 - ? -
10 PsiBlast_PDB 89.2385%-115 - C1 -4PC6 6.1 ?
13 PsiBlast_PDB 89.1984% -94 - C1 -1OB2 6.7 EFTU2_ECOLI
17 PsiBlast_PDB 89.0084%-102 - C1 -2BVN 8.7 EFTU2_ECOLI
64 PsiBlast_CBE 86.4185%-123 - C1 -5I4R 3.4 ?
65 PsiBlast_CBE 85.9585%-122 - C1 -5I4R 3.6 ?
72 PsiBlast_CBE 85.5385%-115 - C1 -2HCJ 3.4 EFTU1_ECOUT
11 PsiBlast_PDB 85.1485%-108 - C1 -4PC7 7.7 EFTU1_ECOLI
119 HHSearch 84.3385%-119 - C1 -2HCJ 3.6 EFTU1_ECOUT
1 PsiBlast_PDB 81.3282% -44 - C1 -4ZV4 6.7 EFTU_PSEAE
21 PsiBlast_CBE 80.5882% -42 - C1 -4ZV4 4.7 EFTU_PSEAE
40 PsiBlast_CBE 78.9777% -49 - C1 -4IW3 6.5 EFTU1_PSEPK
39 PsiBlast_CBE 78.4777% -43 - C1 -4IW3 7.6 EFTU1_PSEPK
108 HHSearch 70.9971% 9 - C1 -2C78 9.6 EFTU1_THET8
47 PsiBlast_CBE 70.7270% 16 - C1 -1EXM 9.6 EFTU1_THETH
53 PsiBlast_CBE 70.7070% 19 - C1 -4LBV 9.5 EFTU1_THETH
43 PsiBlast_CBE 70.7070% 11 - C1 -2C78 9.6 EFTU1_THET8
50 PsiBlast_CBE 70.6170% 20 - C1 -4LBZ 9.6 EFTU1_THETH
42 PsiBlast_CBE 70.5570% 22 - C1 -4H9G 9.8 EFTU1_THETH
52 PsiBlast_CBE 70.2970% 19 - C1 -4LBW 9.6 EFTU1_THETH
49 PsiBlast_CBE 70.2870% 21 - C1 -4LC0 9.7 EFTU1_THETH
51 PsiBlast_CBE 70.2670% 19 - C1 -4LBY 9.5 EFTU1_THETH
48 PsiBlast_CBE 70.0569% 18 - C1 -1EFT 9.2 EFTU_THEAQ
63 PsiBlast_CBE 69.9569% 16 - C1 -1B23 8.8 EFTU_THEAQ
54 PsiBlast_CBE 69.7569% 15 - C1 -1TUI 6.1 EFTU_THEAQ
56 PsiBlast_CBE 69.7369% 14 - C1 -1TUI 6.6 EFTU_THEAQ
44 PsiBlast_CBE 69.7270% 18 - C1 -2C77 9.7 EFTU2_THET8
55 PsiBlast_CBE 69.1869% 16 - C1 -1TUI 6.8 EFTU_THEAQ
46 PsiBlast_CBE 67.3670% 19 - C1 -1HA3 9.2 EFTU1_THET8
33 PsiBlast_CBE 53.0984%-141 - C1 -1ETU 4.8 EFTU1_ECOLI
41 PsiBlast_CBE 31.6482% - - C1 -1EFM 2.4 EFTU2_ECOLI
102 PsiBlast_CBE 18.8034% -10 - C1 -3J25 3.0 TET1_ENTFL
101 PsiBlast_CBE 7.0982% 25 - C1 -5I4R 3.9 ?
100 PsiBlast_CBE 6.8082% 23 - C1 -5I4R 4.6 ?
141 Fugue 5.3262% 86 - C1 -2P8W 3.1