@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMD7: (2017-11-07 )
MNQLTNLSSAEISAQHEQDAKDLTRILPASKKVYIEGSRPDIQVPMREISLTDTPTGLGGEHNPPIMVYDTSGVYTDPNVQIDLNKGLPSVRQKWIEERNDTDVLSGLTSKFGQERLKDIRTADIRFAHIQNPRRAKAGKNVTQMHYAKQGIITPEMEYIAIRENQRQHEAVDMRQHPGQNFGAKNLKEITPEFVRQEVAEGRAIIPANINHPELEPMIIGRNFLVKINANIGNSALGSSIDEEVAKMTWATRWGADTIMDLSTGKNIHETREWIIRNSPVPIGTVPIYQALEKVDGVAENLTWEIFKDTLIEQAEQGVDYFTIHAGVLLRYVPLTANRLTGIVSRGGSIMAQWCLAHHEENFLYTHFDEICEIMKAYDVSFSLGDGLRPGCIQDANDEAQFSELKTLGELTHRAWERDVQVMIEGPGHVPMHMIKENMDLQLEVCKEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWYGTAMLCYVTPKEHLGLPNKKDVKDGIITYKIAAHAADLAKGHPGAQARDNALSKARFEFRWDDQFNLSLDPDTARSMHDETLPKEAHKSAHFCSMCGPKFCSMKITQNVRDYANNLTNSDSEVEEGLKAMKEVYQEQGQKLYHKV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AIR_A_3(4S27)
THIC_ARATH
[Raw transfer]




AIR_A_3(4S28)
THIC_ARATH
[Raw transfer]




SAH_A_4(4S25)
THIC_ARATH
[Raw transfer]




SAH_A_5(4S26)
THIC_ARATH
[Raw transfer]




SAH_A_4(4S28)
THIC_ARATH
[Raw transfer]




SAH_A_4(4S28)
THIC_ARATH
[Raw transfer]




IRN_A_3(3EPN)
THIC_CAUCR
[Raw transfer]




IRN_A_2(4S29)
THIC_ARATH
[Raw transfer]




SAH_B_11(4S26)
THIC_ARATH
[Raw transfer]




IRN_A_3(3EPN)
THIC_CAUCR
[Raw transfer]




MP5_A_3(3EPO)
THIC_CAUCR
[Raw transfer]




MP5_B_4(3EPO)
THIC_CAUCR
[Raw transfer]




MP5_A_3(3EPO)
THIC_CAUCR
[Raw transfer]




MP5_A_3(3EPO)
THIC_CAUCR
[Raw transfer]




SAH_A_5(4S26)
THIC_ARATH
[Raw transfer]




HMH_A_4(3EPM)
THIC_CAUCR
[Raw transfer]




5AD_A_4(4S27)
THIC_ARATH
[Raw transfer]




24 HHSearch 71.5667% 18 - C2 -4S2A - THIC_CAUCR -
8 PsiBlast_PDB 70.9862% -51 - C2 -4S27 6.5 THIC_ARATH
9 PsiBlast_PDB 70.7162% -51 - C2 -4S28 6.4 THIC_ARATH
6 PsiBlast_PDB 70.1362% -50 - C2 -4S25 5.2 THIC_ARATH
3 PsiBlast_PDB 69.7965% 31 - C2 -4S2A - THIC_CAUCR -
7 PsiBlast_PDB 69.5962% -50 - C2 -4S26 4.7 THIC_ARATH
25 HHSearch 69.5567% -17 - C2 -4S28 5.1 THIC_ARATH
13 PsiBlast_CBE 69.0462% -52 - C2 -4S26 5.5 THIC_ARATH
14 Fugue 68.6668% -3 - C2 -3EPO 4.6 THIC_CAUCR
10 PsiBlast_PDB 68.0662% -48 - C2 -4S29 6.6 THIC_ARATH
5 PsiBlast_PDB 68.0662% -49 - C2 -4N7Q - THIC_ARATH -
23 HHSearch 67.8667% 9 - C2 -3EPO 4.6 THIC_CAUCR
2 PsiBlast_PDB 65.9165% 21 - C2 -3EPO 4.6 THIC_CAUCR
1 PsiBlast_PDB 65.8265% 20 - C2 -3EPN 5.6 THIC_CAUCR
4 PsiBlast_PDB 65.2363% 25 - C2 -3EPM 3.1 THIC_CAUCR
11 PsiBlast_CBE 65.1965% 36 - C2 -3EPO 5.0 THIC_CAUCR
12 PsiBlast_CBE 64.9965% 34 - C2 -3EPN 6.3 THIC_CAUCR
37 HHSearch 40.7527%-203 - C2 -1MZH - DEOC_AQUAE -
17 Fugue 28.5218% -10 - C2 -4IMP - ? -
19 Fugue 25.8216% -8 - C2 -1TUB - TBA1A_PIG -