@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMG0: (2017-11-08 )
MTDATAGKIPHVLVIMDGVGHREAIEDNAFLAAKNPNLTAMKAKHPNSLISGSGEDVGLPDGQMGNSEVGHMNLGAGRVLYQDFTRITKDIRTGAFFEHEVLVDAVEKAKAAGGAVHIMGLLSEGGVHSHEDHIVAMCELALKRGAKVYLHAFLDGRDTPPRSAQPSLEKLDALFAQYEGKGRIATMIGRYFAMDRDNRWDRVEQAYRLLTEGEAVRTATTAVEGLELAYAANENDEFVKATRIGEIAKVQDGDSVVFMNFRADRAREITHAFVEKDFAGFERTVVPNLSKFVMLTRYQASIDAPVAYMPEELKNSLGEYLSSLGKTQLRIAETEKYAHVTFFFSGGREDEYPGEKRILIPSPNVATYDLKPEMSAYEVTDELVKAINSGEYDLLVVNYANGDMVGHTGVFDAAVKAVEAVDTCLGRVYEAVMAKKGHMLITADHGNVEQMQDYESGQVHTQHTTELVPFIYVGPTQATIAEGGVLADVAPTILNLMQIPVPAEMQGRNLITLSA

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

3PG_A_4(5VPU)
?
[Raw transfer]




3PG_A_4(5VPU)
?
[Raw transfer]




2PG_A_3(1O99)
GPMI_GEOSE
[Raw transfer]




2PG_A_4(1O98)
GPMI_GEOSE
[Raw transfer]




3PG_A_4(1EJJ)
GPMI_GEOSE
[Raw transfer]




2PG_A_4(1EQJ)
GPMI_GEOSE
[Raw transfer]




2PG_A_4(1O98)
GPMI_GEOSE
[Raw transfer]




3PG_B_5(3IGY)
?
[Raw transfer]




3PG_A_4(1EJJ)
GPMI_GEOSE
[Raw transfer]




2PG_A_4(4QAX)
?
[Raw transfer]




2PG_A_4(4QAX)
?
[Raw transfer]




2PG_A_2(4NWX)
?
[Raw transfer]




3PG_A_4(4NWJ)
?
[Raw transfer]




3PG_A_4(4NWJ)
?
[Raw transfer]




27 HHSearch 95.7399% -75 - C3 -5VPU 5.1 ?
1 PsiBlast_PDB 95.7399% -75 - C3 -5VPU 5.1 ?
9 PsiBlast_PDB 70.6548% 9 - C3 -4NWX 4.1 ?
2 PsiBlast_PDB 70.5049% -5 - C3 -2IFY - GPMI_BACAN -
8 PsiBlast_PDB 70.2248% 8 - C3 -4NWJ 4.1 ?
52 Fugue 70.1749% 1 - C3 -1EJJ 6.4 GPMI_GEOSE
30 HHSearch 70.1550% -7 - C3 -2IFY - GPMI_BACAN -
10 PsiBlast_PDB 69.8148% 10 - C3 -4QAX 3.2 ?
7 PsiBlast_PDB 69.7948% 10 - C3 -4MY4 - ? -
31 HHSearch 69.6049% -2 - C3 -1O98 6.4 GPMI_GEOSE
28 HHSearch 69.5748% 7 - C3 -4NWJ 4.1 ?
6 PsiBlast_PDB 69.4648% 2 - C3 -1O99 5.9 GPMI_GEOSE
32 HHSearch 69.2442% -21 - C3 -5KGN - GPMI_CAEEL -
5 PsiBlast_PDB 68.9648% 3 - C3 -1O98 6.2 GPMI_GEOSE
33 HHSearch 68.9342% -21 - C3 -5KGN - GPMI_CAEEL -
29 HHSearch 68.6148% 9 - C3 -4QAX 3.2 ?
3 PsiBlast_PDB 68.5848% 3 - C3 -1EJJ 6.4 GPMI_GEOSE
4 PsiBlast_PDB 68.5648% 3 - C3 -1EQJ 5.7 GPMI_GEOSE
12 PsiBlast_PDB 68.0242% -22 - C3 -5KGL - GPMI_CAEEL -
11 PsiBlast_PDB 67.7942% -22 - C3 -5KGN - GPMI_CAEEL -
15 PsiBlast_PDB 57.8832% 22 - C3 -3IGY 6.1 ?