@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMK3: (2017-11-08 )
MSSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDEIIVTIHEEESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGETDNTGTTVRFWPSAETFSQTIFNVEILARRLRELSFLNAGVRIVLRDERINLEHVYDYEGGLSEFVKYINEGKNHLNEIFHFTADADNGITVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSLQRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVEKLQPSLRPEITLETFERENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQKGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTIDDAIEADRMFSCLMGDDVEPRRAFIEENALNADIDA

Atome Classification :

(62 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




9JG_A_2(5MMO)
?
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




DOO_A_5(4KFG)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




DOO_B_7(4KFG)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




G3Z_A_2(5MMP)
?
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_2(4WUD)
GYRB_ECOLI
[Raw transfer]




57Y_A_8(5D7R)
GYRB_STAAU
[Raw transfer]




ADP_A_2(4PU9)
GYRB_ECOLI
[Raw transfer]




ADP_A_2(4PRX)
GYRB_ECOLI
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUC)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4XTJ)
GYRB_ECOLI
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




ADP_A_2(4PRV)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUB)
GYRB_ECOLI
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]




B46_A_2(3G7E)
GYRB_ECOLI
[Raw transfer]




O54_A_2(5MMN)
?
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




57W_B_9(5D7C)
GYRB_STAAU
[Raw transfer]




2B7_A_2(4MOT)
?
[Raw transfer]




57Y_B_15(5D7R)
GYRB_STAAU
[Raw transfer]




CJC_A_3(4HYM)
PARE_FRATH
[Raw transfer]




XAM_C_7(4URM)
?
[Raw transfer]




1A1_C_9(4HYP)
GYRB_ECOLI
[Raw transfer]




28G_A_2(4MBC)
?
[Raw transfer]




57X_A_9(5D7D)
GYRB_STAAU
[Raw transfer]




NOV_A_3(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_C_7(4URO)
GYRB_STAAU
[Raw transfer]




1A1_D_11(4HYP)
GYRB_ECOLI
[Raw transfer]




57X_B_17(5D7D)
GYRB_STAAU
[Raw transfer]




28F_A_3(4MB9)
?
[Raw transfer]




1A1_B_7(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_B_2(1AJ6)
GYRB_ECOLI
[Raw transfer]




NOV_D_8(4URO)
GYRB_STAAU
[Raw transfer]




1A1_A_5(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_B_6(4URO)
GYRB_STAAU
[Raw transfer]




XAM_B_6(4URM)
?
[Raw transfer]




NOV_B_4(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_B_4(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]




TTJ_A_2(5BOD)
?
[Raw transfer]




1AV_B_5(4HZ0)
PARE_ECOLI
[Raw transfer]




XAM_A_5(4URM)
?
[Raw transfer]




XAM_D_8(4URM)
?
[Raw transfer]




19Y_A_3(4HXZ)
PARE_FRATH
[Raw transfer]




1AV_A_3(4HZ0)
PARE_ECOLI
[Raw transfer]




0RA_A_2(4EM7)
?
[Raw transfer]




RWX_B_8(4BAE)
GYRB_MYCS2
[Raw transfer]




4S4_A_2(4ZVI)
GYRB_ECOLI
[Raw transfer]




3 PsiBlast_PDB 86.0974% 2 - C4 -4WUD 10.2 GYRB_ECOLI
4 PsiBlast_PDB 85.5174% 3 - C4 -4XTJ 10.0 GYRB_ECOLI
2 PsiBlast_PDB 85.4674% 5 - C4 -4WUC 10.0 GYRB_ECOLI
1 PsiBlast_PDB 85.2174% 7 - C4 -4WUB 10.2 GYRB_ECOLI
122 HHSearch 84.5274% 12 - C4 -1EI1 8.5 GYRB_ECOLI
21 PsiBlast_CBE 83.1973% 11 - C4 -1EI1 8.6 GYRB_ECOLI
5 PsiBlast_PDB 83.1573% -5 - C4 -4PRV 7.5 GYRB_ECOLI
141 Fugue 83.1172% -5 - C4 -1EI1 8.2 GYRB_ECOLI
140 Fugue 83.1172% -5 - C4 -1EI1 8.2 GYRB_ECOLI
8 PsiBlast_PDB 82.5373% 6 - C4 -1EI1 8.2 GYRB_ECOLI
6 PsiBlast_PDB 81.1873% -5 - C4 -4PRX 8.0 GYRB_ECOLI
7 PsiBlast_PDB 80.7873% -0 - C4 -4PU9 7.5 GYRB_ECOLI
9 PsiBlast_PDB 80.7173% -1 - C4 -4ZVI 5.9 GYRB_ECOLI
124 HHSearch 75.7648% -7 - C4 -3ZKB - GYRB_MYCTU -
29 PsiBlast_CBE 75.5744% -22 - C4 -3ZKD - GYRB_MYCTU -
113 HHSearch 75.5461%-105 - C2 -4TMA - ? -
24 PsiBlast_CBE 74.9044% -24 - C4 -3ZKD - GYRB_MYCTU -
123 HHSearch 74.5248% -0 - C4 -3ZKB - GYRB_MYCTU -
43 PsiBlast_CBE 74.5244% -11 - C4 -3ZKB - GYRB_MYCTU -
42 PsiBlast_CBE 74.0844% -6 - C4 -3ZKB - GYRB_MYCTU -
132 HHSearch 70.8545% -7 - C4 -1KIJ 7.8 GYRB_THET8
128 HHSearch 69.4939% -12 - C4 -1S16 10.1 PARE_ECOLI
50 PsiBlast_CBE 69.3944% -11 - C4 -1KIJ 7.0 GYRB_THET8
51 PsiBlast_CBE 69.1639% 5 - C4 -1S16 10.1 PARE_ECOLI
52 PsiBlast_CBE 69.1239% 7 - C4 -1S16 9.9 PARE_ECOLI
49 PsiBlast_CBE 68.8344% -13 - C4 -1KIJ 7.8 GYRB_THET8
20 PsiBlast_PDB 58.5681% -51 - C4 -3G7E 7.5 GYRB_ECOLI
14 PsiBlast_PDB 56.6178% -47 - C4 -5MMN 6.6 ?
19 PsiBlast_PDB 56.2278% -62 - C4 -4KFG 7.4 GYRB_ECOLI
47 PsiBlast_CBE 56.0078% -65 - C4 -4HYP 7.1 GYRB_ECOLI
15 PsiBlast_PDB 55.9578% -46 - C4 -5MMO 7.1 ?
46 PsiBlast_CBE 55.8378% -63 - C4 -4HYP 7.4 GYRB_ECOLI
17 PsiBlast_PDB 55.7478% -64 - C4 -1AJ6 5.5 GYRB_ECOLI
18 PsiBlast_PDB 54.7778% -63 - C4 -4HYP 6.9 GYRB_ECOLI
16 PsiBlast_PDB 54.7378% -63 - C4 -5MMP 6.9 ?
13 PsiBlast_PDB 54.3878% -54 - C4 -4DUH 6.9 GYRB_ECOLI
44 PsiBlast_CBE 54.3178% -52 - C4 -4DUH 7.2 GYRB_ECOLI
48 PsiBlast_CBE 53.8578% -67 - C4 -4HYP 6.8 GYRB_ECOLI
45 PsiBlast_CBE 52.8878% -56 - C4 -4KFG 7.4 GYRB_ECOLI
58 PsiBlast_CBE 50.8953%-107 - C4 -4BAE 7.6 GYRB_MYCS2 (first)
66 PsiBlast_CBE 49.6854% -49 - C4 -4URM 9.7 ?
65 PsiBlast_CBE 48.5054% -51 - C4 -4URM 9.2 ?
146 Fugue 48.3564% -4 * C4 *1EI1 7.6 GYRB_ECOLI
64 PsiBlast_CBE 48.2254% -54 - C4 -4URM 8.8 ?
60 PsiBlast_CBE 47.4754% -52 - C4 -4URO 5.9 GYRB_STAAU
62 PsiBlast_CBE 47.4054% -54 - C4 -4URO 6.0 GYRB_STAAU
61 PsiBlast_CBE 46.9254% -48 - C4 -4URO 6.3 GYRB_STAAU
105 PsiBlast_CBE 46.8646% -54 - C4 -4HZ0 5.3 PARE_ECOLI
106 PsiBlast_CBE 46.8046% -50 - C4 -4HZ0 4.9 PARE_ECOLI
109 PsiBlast_CBE 46.4446% -42 - C4 -5D7D 6.8 GYRB_STAAU
69 PsiBlast_CBE 46.4350% -31 - C4 -4MBC 5.4 ?
70 PsiBlast_CBE 46.1450% -33 - C4 -4MB9 4.4 ?
111 PsiBlast_CBE 46.0946% -46 - C4 -5D7C 7.1 GYRB_STAAU
145 Fugue 45.8766% -73 - C4 -1EI1 Error GYRB_ECOLI
63 PsiBlast_CBE 45.8754% -49 - C4 -4URM 9.2 ?
68 PsiBlast_CBE 45.6150% -29 - C4 -4MOT 5.6 ?
59 PsiBlast_CBE 45.5854% -59 - C4 -4URO 6.0 GYRB_STAAU
72 PsiBlast_CBE 45.5450% -28 - C4 -4EM7 5.0 ?
107 PsiBlast_CBE 45.2946% -43 - C4 -5D7R 6.5 GYRB_STAAU
110 PsiBlast_CBE 45.0846% -47 - C4 -5D7D 7.0 GYRB_STAAU
67 PsiBlast_CBE 45.0250% -27 - C4 -5BOD 5.2 ?
108 PsiBlast_CBE 44.1846% -46 - C4 -5D7R 7.0 GYRB_STAAU