@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMN6: (2017-11-09 )
MKYSEYQPRPDLLKDRIILITGAGDGIGRAAALSYALHGATVVLHGRTLNKLEVIYDEIEGLGAPQPAILPLQLSSASDRDYDFLVSTLEKQFGRLDGILHNAGILGERVELAHYPAEVWDDVMAVNLRAPFALTQALLPLLQKSENASVVFTSSGVGREARALWGAYSVSKVAIEAVSKIFAAEHTYPNIRFNCINPGATRTAMRAKAYPEEDPKTLPTPESIMPAYLYLMGEDSLTLNGQSIDAQD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_3(3IAH)
?
[Raw transfer]




NAP_A_2(3F1K)
YCIK_ECOLI
[Raw transfer]




NAP_A_2(3GY0)
?
[Raw transfer]




EDO_A_7(3E9Q)
YCIK_ECOLI
[Raw transfer]




EDO_A_5(3I1J)
?
[Raw transfer]




EDO_A_8(3I1J)
?
[Raw transfer]




EDO_A_8(3I1J)
?
[Raw transfer]




EOH_A_6(3IAH)
?
[Raw transfer]




EDO_A_3(4Z0T)
?
[Raw transfer]




4 PsiBlast_PDB 95.0851%-106 - C1 -3G1T - ? -
9 PsiBlast_PDB 94.5249%-106 - C1 -3IAH 10.8 ?
10 PsiBlast_PDB 94.5150%-108 - C1 -3E9Q 3.3 YCIK_ECOLI
2 PsiBlast_PDB 93.9152%-105 - C1 -3GZ4 - ? -
7 PsiBlast_PDB 93.7650%-110 - C1 -3F1K 9.3 YCIK_ECOLI
21 PsiBlast_CBE 93.3552%-106 - C1 -3GZ4 - ? -
6 PsiBlast_PDB 92.4651%-112 - C1 -3GY0 12.6 ?
57 HHSearch 91.1555% -79 - C1 -3I1J 3.0 ?
8 PsiBlast_PDB 90.9752% -78 - C1 -3I1J 3.0 ?
5 PsiBlast_PDB 89.9851%-116 - C- -3F5S - ? -
1 PsiBlast_PDB 89.1952%-109 - C- -3F5Q - ? -
58 HHSearch 86.2355% -81 - C1 -3I1J - ? -
11 PsiBlast_PDB 80.8337%-113 - C1 -4Z0T 2.8 ?
13 PsiBlast_PDB 74.7427% -92 - C1 -3O4R - DHRS4_HUMAN -
56 HHSearch 74.5327%-119 - C1 -3UCX - ? -
15 PsiBlast_PDB 71.0727% -95 - C1 -4DQX - ? -
12 PsiBlast_PDB 69.4726% -95 - C1 -4FN4 - ? -
16 PsiBlast_PDB 67.5530% -78 - C1 -3TOX - ? -
48 HHSearch 63.0425% -97 * C1 *5JY1 - ? -
64 Fugue 62.6922% -96 - C1 -1XSE - DHI1_CAVPO -