@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMS0: (2017-11-10 )
MIKKAVLPVAGLGTRFLPASKSIPKEMVTVVDRPAIEYVVREAVEAGIEQIILVTHSSKASIENYFDRNLELETTLEQKKKFDLLAEITQIVPEHVSVVSVRQPQPLGLGHAVLCAKSVVGQDDFAVLLPDVLVKDSSGQNDLSRMISRYNSSQAAQIMVEAVPDHLVDQYGIVDVKHSPNEGESIAMQGIVEKPAVGSAPSNLSVVGRYVLPAKIMQLLENTPKGAGNEIQLTDAIAMLQDTDTVEAYRMQGQTFDCGSKIGYLKAVLHYGIEHPKLGNDFKKLIQELKL

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GUD_D_16(2PA4)
?
[Raw transfer]



UPG_A_5(3JUK)
?
[Raw transfer]



UPG_A_5(3JUK)
?
[Raw transfer]



GUD_B_14(2PA4)
?
[Raw transfer]



UPG_C_13(3JUK)
?
[Raw transfer]



GUD_B_14(2PA4)
?
[Raw transfer]



GUD_D_16(2PA4)
?
[Raw transfer]



GUD_A_13(2PA4)
?
[Raw transfer]



UPG_A_2(5I1F)
?
[Raw transfer]



GUD_C_15(2PA4)
?
[Raw transfer]



UPG_B_9(3JUK)
?
[Raw transfer]



UPG_D_17(3JUK)
?
[Raw transfer]



UTP_A_2(5VE7)
?
[Raw transfer]



CIT_A_2(5VCT)
?
[Raw transfer]
2 PsiBlast_PDB 85.5348%-117 - C1 -5I1F 6.5 ?
1 PsiBlast_PDB 85.1347%-116 * C1 *5J49 - ? -
4 PsiBlast_PDB 85.0447%-120 - C1 -5VE7 6.7 ?
3 PsiBlast_PDB 83.8147%-123 - C1 -5VCT 3.7 ?
21 PsiBlast_CBE 83.4247%-116 - C1 -5J49 - ? -
61 HHSearch 82.1549%-114 - C1 -5J49 - ? -
5 PsiBlast_PDB 79.3240%-121 - C1 -3JUJ - ? -
58 HHSearch 78.9156% -59 - C1 -2E3D - GALU_ECOLI -
6 PsiBlast_PDB 76.9640%-120 - C1 -3JUK 7.7 ?
30 PsiBlast_CBE 76.3340%-121 - C1 -3JUK 8.1 ?
31 PsiBlast_CBE 76.3140%-117 - C1 -3JUK 7.8 ?
29 PsiBlast_CBE 75.7440%-118 - C1 -3JUK 8.0 ?
27 PsiBlast_CBE 74.2847% -56 - C1 -2UX8 - ? -
25 PsiBlast_CBE 73.3947% -59 - C1 -2UX8 - ? -
24 PsiBlast_CBE 72.7047% -53 - C1 -2UX8 - ? -
23 PsiBlast_CBE 72.6547% -50 - C1 -2UX8 - ? -
26 PsiBlast_CBE 72.3547% -59 - C1 -2UX8 - ? -
28 PsiBlast_CBE 71.8847% -60 - C1 -2UX8 - ? -
65 HHSearch 71.4839% -60 - C1 -2PA4 6.2 ?
67 HHSearch 71.3539% -72 - C1 -3JUJ - ? -
68 HHSearch 71.1839% -70 - C1 -3JUK 7.7 ?
64 HHSearch 69.4939% -57 - C1 -2PA4 6.8 ?
7 PsiBlast_PDB 68.2638% -27 - C1 -2PA4 7.0 ?
33 PsiBlast_CBE 68.1938% -28 - C1 -2PA4 6.4 ?
34 PsiBlast_CBE 67.1638% -26 - C1 -2PA4 6.2 ?
32 PsiBlast_CBE 66.5238% -29 - C1 -2PA4 6.8 ?