@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMT9: (2017-11-10 )
MALRHFLTLRDLSTLELNRILERASELKKMQQSNKVYQPFVGKVLGMIFEKSSTRTRISFEAGINQFGGSAIFLSPRDTQLGRGEPIEDSARVISSMLDIVMIRTFGHDIVERFASYSKVPVINGLTDDHHPCQLLADLQTYIEYRGSIEGKTVAWIGDGNNMCNSYIEAAHMMGFKLKIASPKGYEPKPEFLAEFGHCVELFDNAEDAAVNADLIVTDVWASMGQEEEQKLREKAFADFQVNEKLMGLAHPDCLFMHCLPAHRGEEISETMLDHKNAVVWDEAENRLHAQKALMEFLLNENLKKA

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PSQ_F_6(1DUV)
OTC1_ECOLI
[Raw transfer]




PSQ_D_4(1DUV)
OTC1_ECOLI
[Raw transfer]




PSQ_E_5(1DUV)
OTC1_ECOLI
[Raw transfer]




PSQ_E_5(1DUV)
OTC1_ECOLI
[Raw transfer]




PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]




PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]




PAO_A_2(4A8T)
PTC_ENTFA
[Raw transfer]




CIR_B_11(4JQO)
OTC_VIBVU
[Raw transfer]




CIR_A_5(4JQO)
OTC_VIBVU
[Raw transfer]




PUW_B_9(4A8H)
PTC_ENTFA
[Raw transfer]




CIR_C_16(4JQO)
OTC_VIBVU
[Raw transfer]




PUW_A_3(4A8H)
PTC_ENTFA
[Raw transfer]




CP_C_13(2I6U)
OTC_MYCTU
[Raw transfer]




CP_G_7(1C9Y)
OTC_HUMAN
[Raw transfer]




CP_C_13(2I6U)
OTC_MYCTU
[Raw transfer]




PAO_A_2(4A8T)
PTC_ENTFA
[Raw transfer]




CP_A_4(4JFR)
OTC_VIBVU
[Raw transfer]




CP_A_5(4H31)
OTC_VIBVU
[Raw transfer]




CP_B_11(2I6U)
OTC_MYCTU
[Raw transfer]




CP_A_4(4NF2)
OTC_BACAN
[Raw transfer]




CP_A_9(2I6U)
OTC_MYCTU
[Raw transfer]




CP_B_18(4H31)
OTC_VIBVU
[Raw transfer]




CP_A_4(4NF2)
OTC_BACAN
[Raw transfer]




CP_C_12(4NF2)
OTC_BACAN
[Raw transfer]




CP_B_10(4NF2)
OTC_BACAN
[Raw transfer]




CP_D_4(1EP9)
OTC_HUMAN
[Raw transfer]




CP_B_6(4JFR)
OTC_VIBVU
[Raw transfer]




CP_J_10(1FVO)
OTC_HUMAN
[Raw transfer]




CP_J_10(1FVO)
OTC_HUMAN
[Raw transfer]




CP_G_7(1FVO)
OTC_HUMAN
[Raw transfer]




ARG_A_6(4JHX)
OTC_VIBVU
[Raw transfer]




PE5_B_26(4H31)
OTC_VIBVU
[Raw transfer]




1 PsiBlast_PDB 91.4456% -94 - C10 -4F2G - ? -
103 HHSearch 91.2655% -92 - C10 -4F2G - ? -
2 PsiBlast_PDB 90.4249% -67 - C10 -4OH7 - ? -
102 HHSearch 89.8749% -67 - C10 -4OH7 - ? -
107 HHSearch 89.7545% -63 - C10 -4NF2 4.9 OTC_BACAN
21 PsiBlast_CBE 89.1549% -67 - C10 -4OH7 - ? -
101 HHSearch 88.9549% -68 - C10 -4OH7 - ? -
106 HHSearch 88.7548% -73 - C10 -1A1S - OTCA_PYRFU -
105 HHSearch 88.0648% -74 - C10 -1PVV - OTCA_PYRFU -
4 PsiBlast_PDB 87.8047% -73 - C10 -1A1S - OTCA_PYRFU -
3 PsiBlast_PDB 87.2347% -74 - C10 -1PVV - OTCA_PYRFU -
111 HHSearch 84.7241%-110 - C10 -2EF0 - ? -
29 PsiBlast_CBE 84.4645% -32 - C10 -2I6U 4.6 OTC_MYCTU
28 PsiBlast_CBE 84.4445% -32 - C10 -2I6U 4.2 OTC_MYCTU
8 PsiBlast_PDB 84.3845% -48 - C10 -2P2G - OTC_MYCTU -
108 HHSearch 84.2846% -55 - C10 -3TPF - OTCA_CAMJE -
109 HHSearch 84.2646% -54 - C10 -3TPF - OTCA_CAMJE -
7 PsiBlast_PDB 84.1945% -30 - C10 -2I6U 4.1 OTC_MYCTU
104 HHSearch 83.9442% -58 * C10 *1VLV - OTC_THEMA -
9 PsiBlast_PDB 83.4043% -49 - C10 -3TPF - OTCA_CAMJE -
6 PsiBlast_PDB 82.5245% -3 - C10 -4NF2 4.9 OTC_BACAN
118 HHSearch 82.4947% 0 - C10 -2I6U 4.2 OTC_MYCTU
22 PsiBlast_CBE 82.1445% -1 - C10 -4NF2 5.0 OTC_BACAN
23 PsiBlast_CBE 82.1045% -3 - C10 -4NF2 4.9 OTC_BACAN
17 PsiBlast_PDB 78.2139% -1 - C10 -1FVO 3.8 OTC_HUMAN
71 PsiBlast_CBE 78.0934% -30 - C10 -4JFR 4.5 OTC_VIBVU
16 PsiBlast_PDB 77.9339% -5 - C10 -1EP9 4.9 OTC_HUMAN
69 PsiBlast_CBE 77.8034% -26 - C10 -4JHX 2.7 OTC_VIBVU
14 PsiBlast_PDB 77.6639% -0 - C10 -1OTH 7.4 OTC_HUMAN
15 PsiBlast_PDB 77.6539% 1 - C10 -1C9Y 4.8 OTC_HUMAN
115 HHSearch 77.6039% -1 - C10 -1OTH 7.4 OTC_HUMAN
72 PsiBlast_CBE 77.5234% -28 - C10 -4JFR 4.7 OTC_VIBVU
20 PsiBlast_PDB 77.2637% -28 - C10 -1DUV 6.9 OTC1_ECOLI
30 PsiBlast_CBE 77.2539% -2 - C10 -1FVO 4.0 OTC_HUMAN
40 PsiBlast_CBE 77.2137% -28 - C10 -1DUV 6.8 OTC1_ECOLI
75 PsiBlast_CBE 77.1234% -25 - C10 -4H31 5.0 OTC_VIBVU
39 PsiBlast_CBE 76.9937% -28 - C10 -1DUV 6.7 OTC1_ECOLI
64 PsiBlast_CBE 76.9634% -29 - C10 -4JQO 3.7 OTC_VIBVU
116 HHSearch 76.9339% -3 - C10 -1FVO 4.0 OTC_HUMAN
65 PsiBlast_CBE 76.7134% -28 - C10 -4JQO 3.7 OTC_VIBVU
114 HHSearch 76.6340% -10 - C10 -1DUV 6.7 OTC1_ECOLI
74 PsiBlast_CBE 76.4134% -24 - C10 -4H31 5.2 OTC_VIBVU
66 PsiBlast_CBE 76.3234% -26 - C10 -4JQO 3.8 OTC_VIBVU
117 HHSearch 76.0936% -22 - C10 -4A8T 6.1 PTC_ENTFA
47 PsiBlast_CBE 74.7335% -15 - C10 -4A8H 6.5 PTC_ENTFA
48 PsiBlast_CBE 74.6435% -15 - C10 -4A8H 6.4 PTC_ENTFA