@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMU4: (2017-11-10 )
MAETISPRYSRILLKLSGEALSGNKDMGIDAQVLDQMSLSIAHLVGLGVQVGIVVGGGNLYRGSQLQKDGLVGRVTGDQMGMLATVMNGLAMRDALVRRNIRTRLMSALPIGTVVESYSSRDAIRHLSQGEVCVFVAGTGNPFFTTDTAACLRGIEIEANLILKATKVDGVYNKDPSKYEDAVKYDHLTFDQVLDEKLGVMDLTAICLCRDHNVPLQVFDMNKSGALLSVVMGEKEGTRVTK

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UDP_B_13(2BND)
PYRH_ECOLI
[Raw transfer]




UDP_A_7(2BND)
PYRH_ECOLI
[Raw transfer]




UTP_A_3(2BNF)
PYRH_ECOLI
[Raw transfer]




U5P_B_10(2BNE)
PYRH_ECOLI
[Raw transfer]




U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]




U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]




U5P_B_10(2BNE)
PYRH_ECOLI
[Raw transfer]




GOL_B_6(4A7W)
PYRH_HELPY
[Raw transfer]




GOL_B_6(4A7W)
PYRH_HELPY
[Raw transfer]




GOL_A_4(4A7W)
PYRH_HELPY
[Raw transfer]




ANP_A_3(2BRI)
PYRH_PYRFU
[Raw transfer]




GOL_A_5(1YBD)
PYRH_NEIMB
[Raw transfer]




GOL_B_6(1YBD)
PYRH_NEIMB
[Raw transfer]




25 PsiBlast_CBE 93.7161%-155 - C1 -2V4Y - PYRH_ECOLI -
3 PsiBlast_PDB 93.5361%-155 - C1 -2V4Y - PYRH_ECOLI -
26 PsiBlast_CBE 93.4861%-160 - C1 -2V4Y - PYRH_ECOLI -
23 PsiBlast_CBE 92.9161%-155 - C1 -2V4Y - PYRH_ECOLI -
2 PsiBlast_PDB 92.7561%-148 - C1 -2BNE 5.8 PYRH_ECOLI
93 Fugue 92.5961%-148 - C1 -2BNE 5.8 PYRH_ECOLI
1 PsiBlast_PDB 92.3361%-152 - C1 -2BND 7.7 PYRH_ECOLI
30 PsiBlast_CBE 91.9753%-161 - C1 -3EK5 - PYRH_XANCP -
24 PsiBlast_CBE 91.9361%-161 - C1 -2V4Y - PYRH_ECOLI -
29 PsiBlast_CBE 91.6253%-162 - C1 -3EK5 - PYRH_XANCP -
22 PsiBlast_CBE 91.2961%-159 - C1 -2V4Y - PYRH_ECOLI -
31 PsiBlast_CBE 90.4753%-164 - C1 -3EK5 - PYRH_XANCP -
28 PsiBlast_CBE 90.3253%-165 - C1 -3EK5 - PYRH_XANCP -
71 HHSearch 90.0952%-157 - C1 -3EK6 - PYRH_XANCP -
6 PsiBlast_PDB 90.0853%-163 - C1 -3EK5 - PYRH_XANCP -
92 Fugue 89.3754%-153 * C1 *2A1F - PYRH_HAEIN -
7 PsiBlast_PDB 89.2153%-163 - C1 -3EK6 - PYRH_XANCP -
21 PsiBlast_CBE 89.0161%-146 - C1 -2BND 7.5 PYRH_ECOLI
79 HHSearch 88.8162%-145 - C1 -2BNE 5.9 PYRH_ECOLI
5 PsiBlast_PDB 88.8057%-149 - C1 -2BNF 7.8 PYRH_ECOLI
27 PsiBlast_CBE 88.6761%-142 - C1 -2BNE 5.9 PYRH_ECOLI
37 PsiBlast_CBE 87.3651%-162 - C1 -4A7W 2.6 PYRH_HELPY
8 PsiBlast_PDB 86.6651%-160 - C1 -4A7W 3.2 PYRH_HELPY
73 HHSearch 84.0249%-148 - C1 -4A7W 2.6 PYRH_HELPY
77 HHSearch 83.8650%-151 - C1 -1YBD 3.1 PYRH_NEIMB
12 PsiBlast_PDB 83.3848%-152 - C1 -1YBD 2.9 PYRH_NEIMB