@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMV4: (2017-11-11 )
MSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLILKDVPAYVMASGNPAHAFGINIEGMRRKGWSKNTIQGLREAYKLIFKSGLTSVQAIDQIKSEILPSVPEAQLLIDSLEQSERGIVR

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U20_A_4(2QIA)
LPXA_ECOLI
[Raw transfer]




U20_A_4(2QIA)
LPXA_ECOLI
[Raw transfer]




U21_X_2(2QIV)
LPXA_ECOLI
[Raw transfer]




U21_X_2(2QIV)
LPXA_ECOLI
[Raw transfer]




U22_C_6(3I3X)
?
[Raw transfer]




U22_A_4(3I3X)
?
[Raw transfer]




S2N_A_4(3I3A)
?
[Raw transfer]




S2N_C_6(3I3A)
?
[Raw transfer]




SOG_D_4(1J2Z)
LPXA_HELPY
[Raw transfer]




SOG_D_4(1J2Z)
LPXA_HELPY
[Raw transfer]




UD1_A_3(4R37)
?
[Raw transfer]




UD1_A_3(4R37)
?
[Raw transfer]




UD1_A_2(2JF3)
LPXA_ECOLI
[Raw transfer]




EDO_A_9(4E6U)
?
[Raw transfer]




EDO_A_9(4E6U)
?
[Raw transfer]




1 PsiBlast_PDB 92.23100%-138 - C2 -4E6U 3.2 ?
112 HHSearch 89.15100%-113 - C2 -4E6U 3.2 ?
2 PsiBlast_PDB 80.0564%-130 - C2 -5JXX - ? -
26 PsiBlast_CBE 79.8164%-132 - C2 -5JXX - ? -
24 PsiBlast_CBE 79.3964%-132 - C2 -5JXX - ? -
25 PsiBlast_CBE 79.3564%-125 - C2 -5JXX - ? -
23 PsiBlast_CBE 78.1764%-134 - C2 -5JXX - ? -
22 PsiBlast_CBE 78.0964%-129 - C2 -5JXX - ? -
9 PsiBlast_PDB 78.0652%-135 - C2 -2JF2 - LPXA_ECOLI -
119 HHSearch 77.1564%-105 - C2 -5JXX - ? -
3 PsiBlast_PDB 76.9752%-133 - C2 -2AQ9 - LPXA_ECOLI -
8 PsiBlast_PDB 76.8452%-134 - C2 -4J09 - LPXA_ECOLI -
4 PsiBlast_PDB 76.1252%-133 - C2 -2JF3 2.9 LPXA_ECOLI
7 PsiBlast_PDB 75.8152%-133 - C2 -2QIV 5.8 LPXA_ECOLI
6 PsiBlast_PDB 75.3452%-135 - C2 -2QIA 7.2 LPXA_ECOLI
5 PsiBlast_PDB 75.0452%-132 - C2 -1LXA - LPXA_ECOLI -
120 HHSearch 74.0051%-117 - C2 -2QIV 5.8 LPXA_ECOLI
121 HHSearch 73.1851%-118 - C2 -2QIA 7.2 LPXA_ECOLI
34 PsiBlast_CBE 72.3150%-124 - C2 -5DEP - LPXA_PSEA7 -
11 PsiBlast_PDB 71.9650%-128 - C2 -5DEP - LPXA_PSEA7 -
17 PsiBlast_PDB 68.6240%-137 - C2 -4R37 3.5 ?
18 PsiBlast_PDB 66.8142%-134 * C2 *1J2Z 3.3 LPXA_HELPY
117 HHSearch 65.3439%-111 - C2 -4R37 3.5 ?
118 HHSearch 64.9341%-115 - C2 -1J2Z 3.3 LPXA_HELPY