@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMY5: (2017-11-11 )
MNQDFKVYLRLISYLKPYWGVALLVLIGFGMNSATEVSVAKLIKFIIDAIQNASRADLDWFPLLIILLVFFRGLGLFMGGYYTAVISRSLVFSIRQEVYAKLLRLPAQYYLDNSSGHITAKIMYNVEQLTAASSESLKTIVRDGMITLGLLGYLFYTNWRLTICIMVFLPVIGILVRKASKRMRKLSMQVQDTMGDVNHVVQESINGNAVVKSFAGEESEQERFYKSSEENLKRGLKMVIVQNLNSPVVQVVMACAMALIVWLALRPQILGNTTAGEFVAYITAAGLLSKPVKNLTDVNEKLQRGLAAAHSVFELLDLPEEQNSGELKPQLQGAIRFDHVVLNYADGTQAIKDFSLDIRPGETVALVGRSGAGKTSLVNMLVLFQEVSSGQIYLDDLPIRDIELSSLRTQIAMVNQQVVLFNRTVRENIAYGQLHNASDEDVIAAAKAAYAHDFIMNLPNGYDTVLGAQGLNLSGGQRQRIAIARAILKNAPILILDEATSALDNESEHFIQQAFDEAMQDRTTIVIAHRLSTIENADRIVVMDRGQIVEQGTHQELLAKHGAYYQLHQRNFEDH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ANP_D_7(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_A_6(3B5Y)
MSBA_SALTY
[Raw transfer]




ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_C_7(3B5Z)
MSBA_SALTY
[Raw transfer]




ANP_C_8(3B5Y)
MSBA_SALTY
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




6 PsiBlast_PDB 77.5639% - - C2 -3B5X - MSBA_VIBCH -
26 PsiBlast_CBE 77.3439% - - C2 -3B5Z - MSBA_SALTY -
25 PsiBlast_CBE 77.3439% - - C2 -3B5Z 2.3 MSBA_SALTY
3 PsiBlast_PDB 77.3439% - - C2 -3B5Z 2.3 MSBA_SALTY
2 PsiBlast_PDB 77.2339% - - C2 -3B5Y - MSBA_SALTY -
29 PsiBlast_CBE 77.2039% - - C2 -3B5Y 1.9 MSBA_SALTY
28 PsiBlast_CBE 77.2039% - - C2 -3B5Y 1.9 MSBA_SALTY
24 PsiBlast_CBE 77.1939% - - C2 -3B5Z - MSBA_SALTY -
27 PsiBlast_CBE 77.0439% - - C2 -3B5Y 1.9 MSBA_SALTY
138 HHSearch 76.2739% - - C2 -3B5X - MSBA_VIBCH -
5 PsiBlast_PDB 75.5739% - - C2 -3B5W - MSBA_ECOLI -
1 PsiBlast_PDB 75.4498%-133 - C2 -5IDV - ? -
12 PsiBlast_PDB 68.8636% - - C2 -4Q4H - Y288_THEMA -
133 HHSearch 68.7040% -28 - C2 -3B60 - MSBA_SALTY -
21 PsiBlast_CBE 67.9339% -32 - C2 -3B60 - MSBA_SALTY -
23 PsiBlast_CBE 67.9139% -32 - C2 -3B60 - MSBA_SALTY -
22 PsiBlast_CBE 67.4139% -32 - C2 -3B60 - MSBA_SALTY -
8 PsiBlast_PDB 67.2937% -17 - C2 -2ONJ - Y1866_STAAM -
123 Fugue 66.8139% -31 - C2 -3B60 - MSBA_SALTY -
4 PsiBlast_PDB 66.7039% -32 - C2 -3B60 - MSBA_SALTY -