@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VN04: (2017-11-12 )
MSIIVALDAKSQYDALKIVEQLDPTLCRVKVGKELFTHEGPSVVKKLQEENFEVFLDLKFHDIPNTTAQAVCAAADLGVWMVNVHASGGRKMIETCVERLKAGNYQTQLIAVTVLTSMGREDLKDIGLDIEPVEQVKRLAKLTKESGLDGVVCSAQEAKILRELIGQDFSLVTPGIRPEGSNADDQKRIVTPKQAMLDGSTHLVIGRPITKAENPTEMLKSILASIA

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BMQ_G_7(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_G_7(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_E_5(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_H_8(1EIX)
PYRF_ECOLI
[Raw transfer]




BMQ_F_6(1EIX)
PYRF_ECOLI
[Raw transfer]




U5P_H_8(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_A_3(3UWQ)
PYRF_VIBCH
[Raw transfer]




U5P_G_7(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_B_9(3UWQ)
PYRF_VIBCH
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_E_5(1DBT)
PYRF_BACSU
[Raw transfer]




U5P_G_7(1DBT)
PYRF_BACSU
[Raw transfer]




C5P_B_4(2YYU)
PYRF_GEOKA
[Raw transfer]




C5P_A_3(2YYU)
PYRF_GEOKA
[Raw transfer]




C5P_B_4(2YYU)
PYRF_GEOKA
[Raw transfer]




EDO_A_4(1VQT)
PYRF_THEMA
[Raw transfer]




EDO_A_9(1VQT)
PYRF_THEMA
[Raw transfer]




XPE_A_4(3UWQ)
PYRF_VIBCH
[Raw transfer]




EDO_A_9(1VQT)
PYRF_THEMA
[Raw transfer]




PGE_A_7(3UWQ)
PYRF_VIBCH
[Raw transfer]




45 HHSearch 96.7157% -92 - C2 -3LDV - PYRF_VIBCH -
23 PsiBlast_CBE 96.3556% -80 - C2 -1EIX 6.1 PYRF_ECOLI
3 PsiBlast_PDB 96.2756% -78 - C2 -1EIX 6.4 PYRF_ECOLI
25 PsiBlast_CBE 96.2656% -77 - C2 -1EIX 6.4 PYRF_ECOLI
24 PsiBlast_CBE 96.0656% -71 - C2 -1EIX 6.3 PYRF_ECOLI
1 PsiBlast_PDB 95.9057% -80 - C2 -3LDV - PYRF_VIBCH -
49 HHSearch 95.7156% -71 * C2 *1EIX 6.3 PYRF_ECOLI
21 PsiBlast_CBE 94.0657% -87 - C2 -3UWQ 6.3 PYRF_VIBCH
2 PsiBlast_PDB 93.9257% -94 - C2 -3UWQ 6.1 PYRF_VIBCH
5 PsiBlast_PDB 93.8655% -73 - C2 -1JJK - PYRF_ECOLI -
4 PsiBlast_PDB 91.8856% -89 - C2 -1L2U - PYRF_ECOLI -
46 HHSearch 86.0346% -54 - C2 -2YYU 3.6 PYRF_GEOKA
7 PsiBlast_PDB 83.3145% -41 - C2 -1DBT - PYRF_BACSU -
26 PsiBlast_CBE 82.8445% -46 - C2 -1DBT 7.5 PYRF_BACSU
41 HHSearch 82.4445% -28 - C2 -1DBT 6.8 PYRF_BACSU
27 PsiBlast_CBE 82.2745% -44 - C2 -1DBT 7.2 PYRF_BACSU
48 HHSearch 81.8838% -32 - C2 -3RU6 - PYRF_CAMJE -
44 HHSearch 81.8646% 9 - C2 -3TFX - PYRF_LACAC -
11 PsiBlast_PDB 81.5939% -41 - C2 -3RU6 - PYRF_CAMJE -
42 HHSearch 81.3545% -35 - C2 -1DBT 7.2 PYRF_BACSU
9 PsiBlast_PDB 81.1546% -71 - C2 -2YYU 4.2 PYRF_GEOKA
29 Fugue 81.0444% 51 - C2 -1DBT 6.8 PYRF_BACSU
28 PsiBlast_CBE 80.7746% -71 - C2 -2YYU 3.6 PYRF_GEOKA
30 Fugue 77.4742% 48 - C2 -1DBT 6.8 PYRF_BACSU
12 PsiBlast_PDB 66.2930% -78 - C2 -1VQT 3.1 PYRF_THEMA
50 HHSearch 61.4730%-140 - C2 -1VQT 3.0 PYRF_THEMA