@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VN67: (2017-11-12 )
MDTQHSALNARKQQATPRGVGVMCQWYAEKAENATIWDKEGNQFIDFAGGIAVLNTGHRHPKVIAAVTEQLTKFTHTAYQVTPYESYVALAERINERAPIAGPAKAAFFTTGAEAVENAVKIARCYTGRHGIITFGNGFHGRSFMTMAMTGKTAPYKRDFGVMPAGVFHARYPVPAKGISVDAAIESVEDIFSEDIAPHDVAVIVLEPVQGEGGFNVVPAEFLKRLRAICDKHGILLVADEVQSGFARTGKLFAMNHYETKADLITMAKSLGGGFPISGVVGRAEVMDAPNPGGLGGTYAGSPIAVAAAHAVIDAIEEENLCDRANELGAELVATLKDIQQATGDVVTDIRALGSMVAVELETAEQAKVVQNYAMENGLLLLTCGKYGNVIRFLYPLTIPAEQFRQGLDILKQGFATLKAGSAKAMEQSA

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P00_A_3(4JEW)
ARGD_SALTY
[Raw transfer]




PXG_B_6(4JEV)
ARGD_SALTY
[Raw transfer]




P00_A_13(4JEZ)
ARGD_SALTY
[Raw transfer]




P00_A_11(4JEX)
ARGD_SALTY
[Raw transfer]




PXG_A_7(5DJ9)
?
[Raw transfer]




5JV_A_3(5E3K)
?
[Raw transfer]




P00_B_26(4JEX)
ARGD_SALTY
[Raw transfer]




5JV_B_9(5E5I)
?
[Raw transfer]




P00_B_19(4JEW)
ARGD_SALTY
[Raw transfer]




PLP_A_3(2PB2)
ARGD_SALTY
[Raw transfer]




P00_B_18(4JEZ)
ARGD_SALTY
[Raw transfer]




5NJ_A_3(5E5I)
?
[Raw transfer]




PLP_A_3(4JEY)
ARGD_SALTY
[Raw transfer]




PLP_B_9(4JF1)
ARGD_SALTY
[Raw transfer]




PLP_A_3(4JF1)
ARGD_SALTY
[Raw transfer]




PLP_A_4(2E54)
ARGD_THEMA
[Raw transfer]




PLP_B_13(4JEY)
ARGD_SALTY
[Raw transfer]




PLP_A_3(4JF1)
ARGD_SALTY
[Raw transfer]




PLP_A_3(2EO5)
?
[Raw transfer]




POI_C_3(1WKG)
LYSJ_THET8
[Raw transfer]




POI_D_4(1WKG)
LYSJ_THET8
[Raw transfer]




PPE_D_4(1WKH)
LYSJ_THET8
[Raw transfer]




PPE_C_3(1WKH)
LYSJ_THET8
[Raw transfer]




PLP_B_4(1VEF)
LYSJ_THET8
[Raw transfer]




PLP_B_4(2PB0)
ARGD_SALTY
[Raw transfer]




PLP_A_3(1VEF)
LYSJ_THET8
[Raw transfer]




PLP_A_3(2PB0)
ARGD_SALTY
[Raw transfer]




PLP_A_3(2EH6)
ARGD_AQUAE
[Raw transfer]




PLP_B_4(2EH6)
ARGD_AQUAE
[Raw transfer]




PEG_B_14(5EQC)
?
[Raw transfer]




PEG_A_6(5EQC)
?
[Raw transfer]




CIT_A_10(5VIU)
?
[Raw transfer]




EDO_A_7(4JEY)
ARGD_SALTY
[Raw transfer]




PLR_B_4(5D95)
?
[Raw transfer]




EDO_B_7(2PB0)
ARGD_SALTY
[Raw transfer]




PLR_A_3(5D95)
?
[Raw transfer]




23 PsiBlast_CBE 98.5452% -83 - C1 -1SFF - GABT_ECOLI -
34 PsiBlast_CBE 98.4752% -82 - C1 -1SZS - GABT_ECOLI -
25 PsiBlast_CBE 98.1352% -82 - C1 -1SF2 - GABT_ECOLI -
24 PsiBlast_CBE 98.0552% -82 - C1 -1SF2 - GABT_ECOLI -
33 PsiBlast_CBE 97.9052% -82 - C1 -1SZS - GABT_ECOLI -
32 PsiBlast_CBE 97.7352% -81 - C1 -1SZK - GABT_ECOLI -
21 PsiBlast_CBE 97.6452% -82 - C1 -1SFF - GABT_ECOLI -
28 PsiBlast_CBE 97.6152% -82 - C1 -1SZU - GABT_ECOLI -
2 PsiBlast_PDB 97.4452% -80 - C1 -1SFF - GABT_ECOLI -
30 PsiBlast_CBE 97.1152% -80 - C1 -1SZK - GABT_ECOLI -
26 PsiBlast_CBE 97.0452% -82 - C1 -1SF2 - GABT_ECOLI -
35 PsiBlast_CBE 96.9952% -80 - C1 -1SZS - GABT_ECOLI -
22 PsiBlast_CBE 96.9652% -81 - C1 -1SFF - GABT_ECOLI -
29 PsiBlast_CBE 96.6552% -80 - C1 -1SZU - GABT_ECOLI -
5 PsiBlast_PDB 96.5152% -80 - C1 -1SZS - GABT_ECOLI -
31 PsiBlast_CBE 96.3652% -81 - C1 -1SZK - GABT_ECOLI -
27 PsiBlast_CBE 96.3252% -82 - C1 -1SZU - GABT_ECOLI -
1 PsiBlast_PDB 96.1352% -80 - C1 -1SF2 - GABT_ECOLI -
3 PsiBlast_PDB 96.0852% -80 - C1 -1SZU - GABT_ECOLI -
4 PsiBlast_PDB 96.0752% -80 - C1 -1SZK - GABT_ECOLI -
123 HHSearch 65.0835% -10 * C1 *4JEV 5.9 ARGD_SALTY
118 HHSearch 63.1935% -13 - C1 -4JF1 4.4 ARGD_SALTY
79 PsiBlast_CBE 58.6834% -3 - C1 -2E54 4.7 ARGD_THEMA
74 PsiBlast_CBE 56.5936% -11 - C1 -4JEY 4.4 ARGD_SALTY
16 PsiBlast_PDB 56.5935% 3 - C1 -2EO5 3.7 ?
71 PsiBlast_CBE 55.9236% -3 - C1 -4JF1 4.1 ARGD_SALTY
73 PsiBlast_CBE 55.8236% -6 - C1 -4JEY 4.3 ARGD_SALTY
64 PsiBlast_CBE 55.7636% -11 - C1 -2PB2 4.2 ARGD_SALTY
68 PsiBlast_CBE 55.4736% -9 - C1 -4JEW 6.4 ARGD_SALTY
67 PsiBlast_CBE 55.0736% -2 - C1 -4JEW 5.4 ARGD_SALTY
70 PsiBlast_CBE 54.5136% -10 - C1 -4JEX 3.8 ARGD_SALTY
69 PsiBlast_CBE 54.2936% -8 - C1 -4JEX 5.4 ARGD_SALTY
66 PsiBlast_CBE 54.0036% -9 - C1 -2PB0 2.8 ARGD_SALTY
65 PsiBlast_CBE 53.9636% -4 - C1 -2PB0 3.2 ARGD_SALTY
62 PsiBlast_CBE 53.9236% -6 - C1 -4JEZ 3.5 ARGD_SALTY
72 PsiBlast_CBE 53.8336% -9 - C1 -4JF1 4.4 ARGD_SALTY
97 PsiBlast_CBE 53.5833% 10 - C1 -1WKH 6.2 LYSJ_THET8
101 PsiBlast_CBE 53.0533% 12 - C1 -1VEF 3.7 LYSJ_THET8
99 PsiBlast_CBE 52.9533% 11 - C1 -1WKG 5.8 LYSJ_THET8
61 PsiBlast_CBE 52.9236% -7 - C1 -4JEZ 3.1 ARGD_SALTY
78 PsiBlast_CBE 52.1033% 6 - C1 -2EH6 3.0 ARGD_AQUAE
96 PsiBlast_CBE 51.9633% 10 - C1 -1WKH 6.6 LYSJ_THET8
76 PsiBlast_CBE 51.5431% -7 - C1 -5VIU 0.8 ?
98 PsiBlast_CBE 51.4333% 10 - C1 -1WKG 5.8 LYSJ_THET8
100 PsiBlast_CBE 50.8533% 12 - C1 -1VEF 3.9 LYSJ_THET8
77 PsiBlast_CBE 49.7733% 6 - C1 -2EH6 3.4 ARGD_AQUAE