@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VNG1: (2017-11-14 )
MNIAFIGLGNMGGRMAQNLLKAGLKVYGYDLSEVAIQHFAEAGGVVCDSPQDAAKQADVVITMLPAAKHVKEVYLGENGVLEVLKAGSLCIDSSTIDPQTIKDIAAVAHSKNIKICDAPVSGGTIGAQAGTLTFMVGADEQTFNEVKPVLSHMGKNIVHCGDVGAGQIAKICNNLILGISMAAVAEGMALGVKLGIDPQALAGVINTSSGRCWSSDVCNPWPHINENAPASRGYQDGFATQLMLKDLGLAVEAAGQVKQPVLLGGMVQQLYQQMCMRGNAHLDFSSIIQQYLPQEA

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_D_8(2I9P)
3HIDH_HUMAN
[Raw transfer]




NAD_A_5(2I9P)
3HIDH_HUMAN
[Raw transfer]




NAP_A_2(3W6Z)
?
[Raw transfer]




NAP_A_2(3WS7)
?
[Raw transfer]




NAD_C_7(2I9P)
3HIDH_HUMAN
[Raw transfer]




NAD_B_6(2I9P)
3HIDH_HUMAN
[Raw transfer]




NDP_I_9(1WP4)
?
[Raw transfer]




NAD_A_5(5JE8)
?
[Raw transfer]




NAD_C_9(5JE8)
?
[Raw transfer]




NAD_B_7(5JE8)
?
[Raw transfer]




NAD_A_2(3Q3C)
SERDH_PSEAE
[Raw transfer]




NDP_K_11(1WP4)
?
[Raw transfer]




NAD_D_10(5JE8)
?
[Raw transfer]




EPE_A_6(3OBB)
SERDH_PSEAE
[Raw transfer]




EPE_A_6(3OBB)
SERDH_PSEAE
[Raw transfer]




TLA_A_3(3G0O)
?
[Raw transfer]




7VD_C_11(5U5G)
?
[Raw transfer]




TLA_A_3(1VPD)
?
[Raw transfer]




EDO_A_5(3OBB)
SERDH_PSEAE
[Raw transfer]




1 PsiBlast_PDB 85.4649%-119 - C1 -2I9P 11.1 3HIDH_HUMAN
21 PsiBlast_CBE 85.4349%-119 - C1 -2I9P 11.8 3HIDH_HUMAN
65 HHSearch 83.8949%-118 - C1 -2GF2 - 3HIDH_HUMAN -
23 PsiBlast_CBE 83.2949%-120 - C1 -2I9P 10.8 3HIDH_HUMAN
22 PsiBlast_CBE 83.2749%-117 - C1 -2I9P 10.7 3HIDH_HUMAN
68 HHSearch 83.1046%-129 - C1 -3OBB 2.8 SERDH_PSEAE
2 PsiBlast_PDB 82.5649%-115 - C- -2GF2 - 3HIDH_HUMAN -
66 HHSearch 82.0049%-114 - C- -2GF2 - 3HIDH_HUMAN -
4 PsiBlast_PDB 81.2044%-132 - C1 -3OBB 2.8 SERDH_PSEAE
5 PsiBlast_PDB 80.4144%-128 - C1 -3Q3C 6.4 SERDH_PSEAE
3 PsiBlast_PDB 73.2342%-128 - C- -3CKY - HMGD_EUBBA -
83 HHSearch 72.8435%-116 - C1 -1VPD - ? -
79 HHSearch 72.4042%-125 - C- -3CKY - HMGD_EUBBA -
78 HHSearch 72.3342%-124 - C- -3CKY - HMGD_EUBBA -
67 HHSearch 71.3028%-108 - C1 -3DOJ - GLYR1_ARATH -
64 HHSearch 71.0133%-112 - C1 -3PEF - ? -
8 PsiBlast_PDB 70.7035%-136 - C1 -3W6Z 8.4 ?
7 PsiBlast_PDB 70.0336%-134 - C1 -3WS7 8.2 ?
9 PsiBlast_PDB 69.9933%-119 - C1 -1VPD 3.7 ?
10 PsiBlast_PDB 69.9133%-115 - C1 -3PEF - ? -
26 PsiBlast_CBE 67.5833% -81 - C1 -5JE8 9.3 ?
6 PsiBlast_PDB 66.8233% -79 - C1 -5JE8 10.1 ?
24 PsiBlast_CBE 66.7133% -80 - C1 -5JE8 8.3 ?
25 PsiBlast_CBE 64.9733% -79 - C1 -5JE8 9.9 ?