@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VNG3: (2017-11-14 )
MQFTEEQLLIRDMAKSFAQEQIKPNASDWDRDGTFPKETLTQMGQLGFMGMLVSEEWGGSDTGNLAYVLALEEVAAADGATSTIMSVHNSVGCVPILKFGTDEQKERFLKPLAQGEMIGAFALTEPHTGSDAAAIKTRAVKDGDDYILNGAKQFITSGNNAGVIIVFAVTDPSAGKKGISAFLVPRETPGYEVIRVEEKLGLHASDTCQIALTDVRIHKSLMLGKEGEGLKIALANLEGGRIGIAAQAVGLARAALEEATRYAKERITFGKPIFEHQTIAFRLASMATEIEAARQLVHYAARFKEVGQPCLNEASMAKLFASEMTERVCSSALQVFGGYGYLRDFPIERIYRDARICQIYEGTSDIQRLVIARSL

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FDA_A_3(4N5F)
?
[Raw transfer]




FDA_A_3(4N5F)
?
[Raw transfer]




FAD_A_9(1BUC)
ACDS_MEGEL
[Raw transfer]




FAD_A_3(2D29)
?
[Raw transfer]




FAD_A_3(2D29)
?
[Raw transfer]




FAD_A_9(1BUC)
ACDS_MEGEL
[Raw transfer]




FAD_C_3(2DVL)
?
[Raw transfer]




FAD_D_4(2DVL)
?
[Raw transfer]




FAD_C_3(2DVL)
?
[Raw transfer]




FAD_B_4(2D29)
?
[Raw transfer]




CAA_E_5(1JQI)
ACADS_RAT
[Raw transfer]




FAD_B_11(1BUC)
ACDS_MEGEL
[Raw transfer]




FAD_B_11(1BUC)
ACDS_MEGEL
[Raw transfer]




CAA_G_7(1JQI)
ACADS_RAT
[Raw transfer]




COS_A_4(4L1F)
?
[Raw transfer]




COS_B_9(4L1F)
?
[Raw transfer]




FDA_B_15(4N5F)
?
[Raw transfer]




112 HHSearch 94.0261% -91 - C2 -4N5F 9.8 ?
113 HHSearch 93.7367% -97 - C2 -4U83 - ? -
1 PsiBlast_PDB 93.7367% -97 - C2 -4U83 - ? -
23 PsiBlast_CBE 93.4167% -95 - C2 -4U83 - ? -
22 PsiBlast_CBE 91.5967% -91 - C2 -4U83 - ? -
114 HHSearch 90.7067% -93 - C2 -4U83 - ? -
21 PsiBlast_CBE 90.7067% -93 - C2 -4U83 - ? -
2 PsiBlast_PDB 87.1261% -43 - C2 -4N5F 9.8 ?
116 HHSearch 86.8860% -90 - C2 -4M9A - ? -
39 PsiBlast_CBE 85.3843% -86 - C2 -2JIF - ACDSB_HUMAN -
104 HHSearch 85.1143% -87 - C2 -2JIF - ACDSB_HUMAN -
40 PsiBlast_CBE 85.0543% -86 - C2 -2JIF - ACDSB_HUMAN -
38 PsiBlast_CBE 85.0543% -86 - C2 -2JIF - ACDSB_HUMAN -
32 PsiBlast_CBE 84.8145% -87 - C2 -2VIG - ACADS_HUMAN -
121 HHSearch 84.6846% -88 - C2 -2VIG - ACADS_HUMAN -
41 PsiBlast_CBE 84.6849% -93 - C2 -2DVL 9.2 ?
9 PsiBlast_PDB 84.5643% -87 - C2 -2JIF - ACDSB_HUMAN -
124 HHSearch 84.4749% -91 - C2 -2DVL 8.6 ?
10 PsiBlast_PDB 84.4049% -91 - C2 -2DVL 8.6 ?
6 PsiBlast_PDB 84.3145% -88 - C2 -2VIG - ACADS_HUMAN -
28 PsiBlast_CBE 83.9446% -82 - C2 -1JQI 5.1 ACADS_RAT
5 PsiBlast_PDB 82.8946% -81 - C2 -1JQI 5.5 ACADS_RAT
24 PsiBlast_CBE 81.4161% -48 - C2 -4N5F 7.8 ?
122 HHSearch 77.3547% -40 * C2 *2D29 8.8 ?
14 PsiBlast_PDB 75.2047% -39 - C2 -2D29 8.8 ?
45 PsiBlast_CBE 73.9047% -42 - C2 -2D29 9.2 ?
7 PsiBlast_PDB 72.6743% -7 - C2 -1BUC 9.7 ACDS_MEGEL
123 HHSearch 72.3644% -3 - C2 -1BUC 9.7 ACDS_MEGEL
36 PsiBlast_CBE 71.2843% -3 - C2 -1BUC 9.7 ACDS_MEGEL
126 Fugue 68.2144% 25 - C2 -1BUC 9.7 ACDS_MEGEL