@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VNT7: (2017-11-17 )
MSEQEKKTPLLHIENLRVSFKGEDKQYIETVKGISFDIPTNTTVALVGESGSGKSVTSLATMGLLPVGQSKIDEKSKIIFEGKDLLGLSRTEMRKICGKDIAMIFQEPMSSLNPVFTVGNQIAEVLCLHMGMSRKQARQRVLELLKEVGIPSPETKIDAYPNQLSGGQQQRVMIAMAIACEPKLLIADEPTTALDVTIQKQIIDLLESLRQRRQMSMLFITHDLALVGEIADQVIVMRHGEIREQGTAEQVLEQPKDVYTRALLYCRPQMSQRPYRLPVTSDFMRQENNILVEQSFDVSEIPERKRGLNGDEKIILEVKDLKKSFYSRKGLFGKEEFQVVKGVSFKLAKGKTLGLVGESGSGKTTVGLLLMRLHQASGGQALIEGKDILSLTEKEFAKYQRKIQIIFQNPYASLNPRFTIGQILLEPMQIHGIGKDDAERKQIALGLLERVNLLEQAYYRYPHEFSGGQRQRIAIARCLTLKPEILICDESVSALDVSVQAQVLNLLQDLQDEFGLSYIFISHDLSVVKYISDQVMVMNHGEVVEIANSDELYAHPQYDYTKRLLQAIPQGIQHVS

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




ANP_A_6(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_D_7(3B5Y)
MSBA_SALTY
[Raw transfer]




ANP_B_5(3B5Y)
MSBA_SALTY
[Raw transfer]




ADP_D_8(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_B_6(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_C_7(3B5Z)
MSBA_SALTY
[Raw transfer]




ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]




ANP_C_8(3B5Y)
MSBA_SALTY
[Raw transfer]




123 HHSearch 76.1225% -20 - C2 -5KO2 - MDR1A_MOUSE -
124 HHSearch 70.3627% -23 - C2 -4F4C - PGP1_CAEEL -
2 PsiBlast_PDB 68.1732%-148 - C2 -3TUZ - METN_ECOLI -
24 PsiBlast_CBE 67.4232%-150 - C2 -3TUI - METN_ECOLI -
5 PsiBlast_PDB 66.6532%-149 - C2 -3TUJ - METN_ECOLI -
122 HHSearch 66.5325% -16 - C2 -5KO2 - MDR1A_MOUSE -
25 PsiBlast_CBE 66.1632%-141 - C2 -3TUI - METN_ECOLI -
21 PsiBlast_CBE 66.1032%-147 - C2 -3TUZ - METN_ECOLI -
1 PsiBlast_PDB 66.0232%-141 - C2 -3TUI - METN_ECOLI -
22 PsiBlast_CBE 65.8732%-143 - C2 -3TUZ - METN_ECOLI -
26 PsiBlast_CBE 65.0132%-139 - C2 -3TUI - METN_ECOLI -
23 PsiBlast_CBE 64.9032%-143 - C2 -3TUZ - METN_ECOLI -
43 PsiBlast_CBE 64.4831%-120 - C2 -5X40 - CBIO_RHOCB -
107 PsiBlast_CBE 64.1231%-122 - C2 -3FVQ 7.5 FBPC_NEIG1
108 PsiBlast_CBE 63.6131%-123 - C2 -3FVQ 6.9 FBPC_NEIG1
146 Fugue 63.3828%-113 - C2 -3TUZ - METN_ECOLI -
44 PsiBlast_CBE 62.7631%-115 - C2 -5X40 - CBIO_RHOCB -
3 PsiBlast_PDB 62.4032%-141 - C2 -3DHW - METN_ECOLI -
142 HHSearch 62.0131%-124 - C2 -3FVQ - FBPC_NEIG1 -
20 PsiBlast_PDB 61.6532%-136 - C2 -1Z47 - ? -
101 PsiBlast_CBE 34.4131% - - C2 -3B5Y 1.9 MSBA_SALTY
100 PsiBlast_CBE 34.4131% - - C2 -3B5Y 1.9 MSBA_SALTY
102 PsiBlast_CBE 34.4031% - - C2 -3B5Y 2.1 MSBA_SALTY
99 PsiBlast_CBE 34.4031% - - C2 -3B5Y 1.9 MSBA_SALTY
98 PsiBlast_CBE 34.3931% - - C2 -3B5Z 2.3 MSBA_SALTY
97 PsiBlast_CBE 34.3931% - - C2 -3B5Z 2.9 MSBA_SALTY
96 PsiBlast_CBE 34.3931% - - C2 -3B5Z 2.3 MSBA_SALTY
95 PsiBlast_CBE 34.3931% - - C2 -3B5Z 2.5 MSBA_SALTY