@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VNW2: (2017-11-18 )
MKRPIYLDYAATTPVDPQVAERMMECLTFDGTFGNAASRSHAYGWQAEEKVEYAREQVANLIKADPREIVWTSGATESDNLALKGVAQFYASKGKHIITSKIEHKAVLDPCRELEEQGFEITYLEPEPQTGLITPEMVKAALRPDTILVSLMMVNNEIGTVTDVAVIGELTRANKTFFHVDAAQAAGKVDIDLSTMKIDLMSFSAHKIYGPKGIGALYVRRSPRVRLKAQIHGGGHERGMRSGTLATHQIVGMGEAFELAGKTMHAEQERIRKLRDKLWNGLQDLEQVFLNGHPTQNVANYLNVSFNFVEGESLMMSLKDAAVSSGSACTSATLEPSYVLRALGLSDELAHSSIRFSFGKYTTEEDIDHVLTITKAAVEKLRELSPLWDMYKEGIDLSTVEWAEH

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMP_A_5(4R5F)
ISCS2_ARCFU
[Raw transfer]



CIT_A_6(5FT4)
CSDA_ECOLI
[Raw transfer]



CYS_F_6(1ECX)
?
[Raw transfer]



GOL_B_7(4LW2)
CSDA_ECOLI
[Raw transfer]



ALA_B_8(5B89)
?
[Raw transfer]



PLP_A_3(3A9X)
SCLY_RAT
[Raw transfer]



PLP_D_4(1ECX)
?
[Raw transfer]



PLP_D_4(1ECX)
?
[Raw transfer]



PLP_C_3(1ECX)
?
[Raw transfer]



PLP_A_3(3VAX)
?
[Raw transfer]



PLP_C_3(1ECX)
?
[Raw transfer]



PLP_A_3(3VAX)
?
[Raw transfer]



PLP_B_6(3LVJ)
ISCS_ECO57
[Raw transfer]



PLP_B_4(3VAX)
?
[Raw transfer]



PLP_A_3(3LVK)
ISCS_ECO57
[Raw transfer]



GOL_B_13(5FT6)
CSDA_ECOLI
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_B_4(3A9X)
SCLY_RAT
[Raw transfer]



PLP_B_7(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_B_7(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_B_8(3A9Y)
SCLY_RAT
[Raw transfer]



PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]



CYS_E_5(1ECX)
?
[Raw transfer]



ALA_A_3(5J8Q)
SUFS_BACSU
[Raw transfer]
1 PsiBlast_PDB 97.8368% -93 - C1 -3LVJ - ISCS_ECO57 -
2 PsiBlast_PDB 96.5868% -91 - C1 -3LVK 3.0 ISCS_ECO57
21 PsiBlast_CBE 93.3168% -91 - C1 -3LVJ 3.5 ISCS_ECO57
46 HHSearch 87.7455% 0 - C- -5KZ5 - NFS1_HUMAN -
4 PsiBlast_PDB 87.5854% 0 - C- -5KZ5 - FRDA_HUMAN (first) -
23 PsiBlast_CBE 78.6054% -84 - C1 -5USR - ? -
6 PsiBlast_PDB 78.1742% -65 - C1 -4EB5 - ISCS2_ARCFU -
3 PsiBlast_PDB 78.0454% -85 - C1 -5USR - ? -
7 PsiBlast_PDB 77.0042% -66 - C1 -4EB7 - ISCS2_ARCFU -
8 PsiBlast_PDB 76.8442% -64 - C1 -4HVK - ISCS2_ARCFU -
47 HHSearch 76.4742% -65 - C1 -4EB5 - ISCS2_ARCFU -
48 HHSearch 76.1142% -63 - C1 -4HVK - ISCS2_ARCFU -
24 PsiBlast_CBE 75.8942% -69 - C1 -4EB7 - ISCS2_ARCFU -
25 PsiBlast_CBE 73.9242% -71 - C1 -4EB5 - ISCS2_ARCFU -
5 PsiBlast_PDB 73.3342% -64 - C1 -4R5F 3.9 ISCS2_ARCFU
51 HHSearch 69.4138% -30 * C1 *1ECX 3.8 ?
36 Fugue 68.5938% -24 - C1 -1ECX 3.6 ?
27 PsiBlast_CBE 67.8938% -23 - C1 -1ECX 3.8 ?
10 PsiBlast_PDB 66.2838% -26 - C1 -1ECX 3.9 ?
52 HHSearch 66.0638% -32 - C1 -1EG5 3.6 ?
11 PsiBlast_PDB 65.9238% -26 - C1 -1EG5 3.6 ?
34 PsiBlast_CBE 59.4731% 8 - C1 -3A9Y 4.5 SCLY_RAT
63 HHSearch 58.8132% -9 - C1 -3A9Z 4.4 SCLY_RAT
64 HHSearch 57.8732% 0 - C1 -3A9Z 4.3 SCLY_RAT
35 PsiBlast_CBE 54.8431% 17 - C1 -3A9X 4.1 SCLY_RAT
33 PsiBlast_CBE 54.4831% 1 - C1 -3A9Z 4.4 SCLY_RAT
15 PsiBlast_PDB 53.8631% 10 - C1 -3A9X 4.4 SCLY_RAT
9 PsiBlast_PDB 53.3347% -17 - C1 -3VAX 3.7 ?
26 PsiBlast_CBE 52.3247% -17 - C1 -3VAX 2.9 ?
16 PsiBlast_PDB 51.4431% 20 - C1 -3A9Z 4.3 SCLY_RAT
49 HHSearch 51.3445% -10 - C1 -3VAX 3.7 ?