@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VNZ3: (2017-11-18 )
MVKQRTLNRVVKASGIGLHSGQKVMINFIPHTVDGGIVFRRIDLDPPVDIPANALLIQEAFMCSNLVTGDIKVGTIEHVMSAIASLGIDNLIVEVSASEVPIMDGSAGPFIYLLMQGGLREQDAPKKFIKILKPVEALIDDKKAIFSPHNGFQLNFTIDFDHPAFAKEYQSATIDFSTETFVYEVSEARTFGFMKDLDYLKANNLALGASLDNAIGVDDTGVVNEEGLRFADEFVRHKILDAVGDLYLLGHQIIAKFDGYKSGHALNNQLLRNVQSDPSNYEIVTFDDEKDCPIPYVSVT

Atome Classification :

(59 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

L58_C_16(4FW5)
LPXC_PSEAE
[Raw transfer]




L59_C_24(4FW6)
LPXC_PSEAE
[Raw transfer]




L63_C_25(4FW7)
LPXC_PSEAE
[Raw transfer]




L52_C_11(4FW3)
LPXC_PSEAE
[Raw transfer]




L52_A_6(4FW3)
LPXC_PSEAE
[Raw transfer]




1WM_A_4(4LCG)
LPXC_PSEAE
[Raw transfer]




L58_D_20(4FW5)
LPXC_PSEAE
[Raw transfer]




L59_B_15(4FW6)
LPXC_PSEAE
[Raw transfer]




C90_A_2(5VWM)
?
[Raw transfer]




L52_D_13(4FW3)
LPXC_PSEAE
[Raw transfer]




L63_B_15(4FW7)
LPXC_PSEAE
[Raw transfer]




3P3_D_15(4FW4)
LPXC_PSEAE
[Raw transfer]




L58_A_6(4FW5)
LPXC_PSEAE
[Raw transfer]




L63_A_6(4FW7)
LPXC_PSEAE
[Raw transfer]




L59_A_6(4FW6)
LPXC_PSEAE
[Raw transfer]




3P3_C_11(4FW4)
LPXC_PSEAE
[Raw transfer]




8Q8_B_9(5N8C)
LPXC_PSEAE
[Raw transfer]




2SZ_A_4(4OKG)
LPXC_PSEAE
[Raw transfer]




3P3_B_8(4FW4)
LPXC_PSEAE
[Raw transfer]




C90_A_3(3NZK)
?
[Raw transfer]




2SZ_A_4(4OKG)
LPXC_PSEAE
[Raw transfer]




1JS_A_5(4J3D)
LPXC_PSEAE
[Raw transfer]




3P3_A_4(3P3E)
LPXC_PSEAE
[Raw transfer]




C90_B_6(3NZK)
?
[Raw transfer]




1JS_B_8(4J3D)
LPXC_PSEAE
[Raw transfer]




3P3_A_6(4FW4)
LPXC_PSEAE
[Raw transfer]




8Q8_A_5(5N8C)
LPXC_PSEAE
[Raw transfer]




ZH4_A_3(3PS2)
?
[Raw transfer]




L52_B_9(4FW3)
LPXC_PSEAE
[Raw transfer]




L58_B_10(4FW5)
LPXC_PSEAE
[Raw transfer]




3P3_A_3(3P3G)
?
[Raw transfer]




RFN_A_3(3UHM)
LPXC_PSEAE
[Raw transfer]




RFN_A_3(3UHM)
LPXC_PSEAE
[Raw transfer]




24G_A_6(4MDT)
LPXC_ECOLI
[Raw transfer]




3P3_A_3(3P3G)
?
[Raw transfer]




5EN_A_4(5DRR)
LPXC_PSEAE
[Raw transfer]




5EM_A_4(5DRQ)
LPXC_PSEAE
[Raw transfer]




2SZ_B_6(4OKG)
LPXC_PSEAE
[Raw transfer]




03I_B_6(3U1Y)
LPXC_PSEAE
[Raw transfer]




24G_D_15(4MDT)
LPXC_ECOLI
[Raw transfer]




03I_A_4(3U1Y)
LPXC_PSEAE
[Raw transfer]




1WN_A_5(4LCH)
LPXC_PSEAE
[Raw transfer]




C90_A_3(5U39)
?
[Raw transfer]




7TD_A_4(5U3B)
?
[Raw transfer]




GVR_A_3(4ISA)
LPXC_ECOLI
[Raw transfer]




GVR_A_5(2VES)
LPXC_PSEAE
[Raw transfer]




GVR_C_12(2VES)
LPXC_PSEAE
[Raw transfer]




7TD_B_7(5U3B)
?
[Raw transfer]




L53_A_3(3PS3)
?
[Raw transfer]




1WL_A_4(4LCF)
LPXC_PSEAE
[Raw transfer]




L53_A_3(3PS3)
?
[Raw transfer]




GVR_B_8(2VES)
LPXC_PSEAE
[Raw transfer]




ZH2_A_3(3PS1)
?
[Raw transfer]




2CW_A_3(4MQY)
LPXC_ECOLI
[Raw transfer]




GOL_A_8(4FW7)
LPXC_PSEAE
[Raw transfer]




24G_B_9(4MDT)
LPXC_ECOLI
[Raw transfer]




8GJ_A_2(5UPG)
LPXC_PSEAE
[Raw transfer]




LTF_B_7(4IS9)
LPXC_ECOLI
[Raw transfer]




24G_C_12(4MDT)
LPXC_ECOLI
[Raw transfer]




LTF_A_5(4IS9)
LPXC_ECOLI
[Raw transfer]




FMT_A_9(4ISA)
LPXC_ECOLI
[Raw transfer]




EDO_A_5(3UHM)
LPXC_PSEAE
[Raw transfer]




DMS_A_7(3PS2)
?
[Raw transfer]




31 PsiBlast_CBE 78.7258% -95 - C11 -4FW4 5.8 LPXC_PSEAE
35 PsiBlast_CBE 78.6058% -99 - C11 -4FW3 4.4 LPXC_PSEAE
32 PsiBlast_CBE 78.5458% -94 - C11 -4FW4 5.4 LPXC_PSEAE
34 PsiBlast_CBE 78.1558% -98 - C11 -4FW3 6.5 LPXC_PSEAE
36 PsiBlast_CBE 78.0758% -99 - C11 -4FW3 5.1 LPXC_PSEAE
42 PsiBlast_CBE 78.0558%-101 - C11 -5U3B 4.4 ?
26 PsiBlast_CBE 77.9158% -92 - C11 -4FW6 5.2 LPXC_PSEAE
23 PsiBlast_CBE 77.7158% -97 - C11 -4FW7 6.9 LPXC_PSEAE
21 PsiBlast_CBE 77.6858% -94 - C11 -5N8C 5.3 LPXC_PSEAE
20 PsiBlast_PDB 77.6658%-100 - C11 -5U3B 4.5 ?
14 PsiBlast_PDB 77.5058% -96 - C11 -4OKG 6.6 LPXC_PSEAE
12 PsiBlast_PDB 77.5058% -95 - C11 -4LCG 4.1 LPXC_PSEAE
9 PsiBlast_PDB 77.4558% -97 - C11 -3U1Y 7.3 LPXC_PSEAE
4 PsiBlast_PDB 77.4058%-101 - C11 -4FW5 4.8 LPXC_PSEAE
15 PsiBlast_PDB 77.3958% -92 - C11 -5DRQ 4.1 LPXC_PSEAE
11 PsiBlast_PDB 77.3658% -94 - C11 -4LCF 5.3 LPXC_PSEAE
5 PsiBlast_PDB 77.3458% -97 - C11 -4FW6 4.7 LPXC_PSEAE
1 PsiBlast_PDB 77.3458% -93 - C11 -5N8C 5.5 LPXC_PSEAE
16 PsiBlast_PDB 77.3358% -93 - C11 -5DRR 4.4 LPXC_PSEAE
6 PsiBlast_PDB 77.3058% -97 - C11 -4FW7 5.5 LPXC_PSEAE
30 PsiBlast_CBE 77.2858%-101 - C11 -4FW5 5.2 LPXC_PSEAE
13 PsiBlast_PDB 77.2658% -95 - C11 -4LCH 5.1 LPXC_PSEAE
2 PsiBlast_PDB 77.2558% -97 - C11 -4FW3 6.4 LPXC_PSEAE
18 PsiBlast_PDB 77.2458% -97 - C11 -5VWM 6.3 ?
28 PsiBlast_CBE 77.1958% -93 - C11 -4FW5 7.5 LPXC_PSEAE
24 PsiBlast_CBE 77.0958% -94 - C11 -4FW7 6.0 LPXC_PSEAE
33 PsiBlast_CBE 77.0758% -98 - C11 -4FW4 5.2 LPXC_PSEAE
29 PsiBlast_CBE 77.0458% -93 - C11 -4FW5 7.5 LPXC_PSEAE
39 PsiBlast_CBE 76.8458% -98 - C11 -2VES 4.8 LPXC_PSEAE
17 PsiBlast_PDB 76.8458% -98 - C11 -5UPG 6.7 LPXC_PSEAE
27 PsiBlast_CBE 76.8158% -95 - C11 -4FW6 5.8 LPXC_PSEAE
40 PsiBlast_CBE 76.5958% -94 - C11 -2VES 5.0 LPXC_PSEAE
8 PsiBlast_PDB 76.5858% -94 - C11 -3P3E 3.8 LPXC_PSEAE
3 PsiBlast_PDB 76.5158% -96 - C11 -4FW4 5.4 LPXC_PSEAE
70 HHSearch 76.4459% -52 - C11 -4OKG 6.6 LPXC_PSEAE
7 PsiBlast_PDB 76.2758% -89 - C11 -2VES 4.6 LPXC_PSEAE
10 PsiBlast_PDB 76.2458% -96 - C11 -3UHM 6.3 LPXC_PSEAE
19 PsiBlast_PDB 76.1758% -99 - C11 -4J3D 4.2 LPXC_PSEAE
38 PsiBlast_CBE 76.0558% -95 - C11 -3U1Y 7.4 LPXC_PSEAE
37 PsiBlast_CBE 76.0358% -94 - C11 -4OKG 5.5 LPXC_PSEAE
43 PsiBlast_CBE 75.2758% -91 - C11 -5U39 4.7 ?
53 PsiBlast_CBE 75.2250% -31 - C11 -4IS9 5.1 LPXC_ECOLI
71 HHSearch 74.4151% -31 - C11 -3PS3 4.8 ?
45 PsiBlast_CBE 74.2552% -29 - C11 -3NZK 5.4 ?
72 HHSearch 74.2151% -34 - C11 -3P3G 5.0 ?
69 HHSearch 74.2159% -49 - C11 -3UHM 6.3 LPXC_PSEAE
54 PsiBlast_CBE 74.1650% -32 - C11 -3PS3 4.8 ?
41 PsiBlast_CBE 74.1458% -89 - C11 -4J3D 4.5 LPXC_PSEAE
44 PsiBlast_CBE 74.1352% -26 - C11 -3NZK 4.8 ?
57 PsiBlast_CBE 74.0750% -35 - C11 -3P3G 5.0 ?
50 PsiBlast_CBE 73.9250% -34 - C11 -4MQY 6.0 LPXC_ECOLI
47 PsiBlast_CBE 73.6250% -30 - C11 -4MDT 3.8 LPXC_ECOLI
56 PsiBlast_CBE 73.5950% -31 - C11 -3PS1 4.9 ?
55 PsiBlast_CBE 73.4750% -34 - C11 -3PS2 4.5 ?
51 PsiBlast_CBE 73.4250% -32 - C11 -4ISA 5.1 LPXC_ECOLI
48 PsiBlast_CBE 73.2750% -31 - C11 -4MDT 6.0 LPXC_ECOLI
52 PsiBlast_CBE 72.4250% -29 - C11 -4IS9 4.6 LPXC_ECOLI
49 PsiBlast_CBE 72.3250% -29 - C11 -4MDT 4.3 LPXC_ECOLI
46 PsiBlast_CBE 71.4350% -29 - C11 -4MDT 4.9 LPXC_ECOLI