@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VNZ8: (2017-11-18 )
MSPTTAANQAKKLIKVPEMRRIKHIHFVGIGGAGMCGIAEVLANQGYKISGSDINASKTTQQLEENGIKVYIGHEAENIKNANVLVVSTAIDPENPEVKAAIEQRIPIVRRAEMLGELMRYRHGIAVAGTHGKTTTTSLLTTMLAEENLDPTYVIGGLLNSTGVNAALGESRFIVAEADESDASFLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIREILPRVGRPVITYGFNEDNDIRAIDVERDGMRSHFTVLRKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVLSQVDQLLLLEVYPAGEKPIVGADSRTLARSIRLRGQVEPILIDPVEGNLQNIMQNVLQPNDLLLTQGAGNVGAISVELAQHHLYVK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_3(1GQY)
MURC_HAEIN
[Raw transfer]



ACP_B_5(1GQY)
MURC_HAEIN
[Raw transfer]



ANP_A_8(1P3D)
MURC_HAEIN
[Raw transfer]



ACP_B_5(1GQY)
MURC_HAEIN
[Raw transfer]



AMP_A_3(4HV4)
MURC_YERPE
[Raw transfer]



AMP_B_5(4HV4)
MURC_YERPE
[Raw transfer]



AMP_B_5(4HV4)
MURC_YERPE
[Raw transfer]



EPU_A_7(1P31)
MURC_HAEIN
[Raw transfer]



UMA_A_7(1P3D)
MURC_HAEIN
[Raw transfer]



UMA_A_7(1P3D)
MURC_HAEIN
[Raw transfer]
5 PsiBlast_PDB 89.7056%-105 - C1 -1P3D 9.6 MURC_HAEIN
4 PsiBlast_PDB 89.4956%-110 - C1 -1P31 6.7 MURC_HAEIN
21 PsiBlast_CBE 88.9858%-113 - C1 -1GQY 10.0 MURC_HAEIN
1 PsiBlast_PDB 88.7558%-115 * C1 *1GQY 9.7 MURC_HAEIN
2 PsiBlast_PDB 87.9860% -69 - C1 -4HV4 7.8 MURC_YERPE
22 PsiBlast_CBE 87.0360% -68 - C1 -4HV4 7.2 MURC_YERPE
30 HHSearch 86.3061% -67 - C1 -4HV4 7.2 MURC_YERPE
3 PsiBlast_PDB 84.9560% -68 - C1 -2F00 - MURC_ECOLI -
31 HHSearch 84.2058% -68 - C1 -1P3D 8.9 MURC_HAEIN
32 HHSearch 82.7358% -74 - C1 -1GQY 10.0 MURC_HAEIN
28 HHSearch 82.0462% -32 - C1 -2F00 - MURC_ECOLI -
36 HHSearch 77.0468%-119 - C1 -5VVW - ? -
23 PsiBlast_CBE 75.2068%-119 - C1 -5VVW - ? -
26 PsiBlast_CBE 74.7268%-124 - C1 -5VVW - ? -
6 PsiBlast_PDB 74.7068%-122 - C1 -5VVW - ? -
25 PsiBlast_CBE 74.6468%-123 - C1 -5VVW - ? -
24 PsiBlast_CBE 74.4168%-118 - C1 -5VVW - ? -
27 HHSearch 60.6529% -20 - C1 -1J6U - MURC_THEMA -
7 PsiBlast_PDB 58.1529% -19 - C1 -1J6U - MURC_THEMA -
9 PsiBlast_PDB 48.5831% -22 - C1 -3EAG - ? -