@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VP30: (2017-11-19 )
MTQYTAQSLEVLSGLDPVRRRPGMYTDTSRPNHLAQEVIDNAVDEALAGHADKICVTVYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVVNALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSPKFALKALKHNLKAKAVLAAGLKITYIDQINDEKIEWQFENGLVDYLMDELQDREILPNPAFVSSGQADRAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVLNIAKDAFALWLNQHAEIAMQLAEMVISKAGRRLKAAKKVERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVDPGSDDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRIDIGKDVHYALDDEELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKQWLEQKGNLADITV

Atome Classification :

(55 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_2(4PRX)
GYRB_ECOLI
[Raw transfer]




DOO_B_12(4KQV)
PARE_FRATH
[Raw transfer]




ANP_A_2(4WUD)
GYRB_ECOLI
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




ADP_A_2(4PRV)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUB)
GYRB_ECOLI
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUC)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ADP_A_2(4PU9)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




DOO_A_5(4KQV)
PARE_FRATH
[Raw transfer]




ANP_A_2(4XTJ)
GYRB_ECOLI
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




1EU_B_4(3FV5)
PARE_ECOLI
[Raw transfer]




RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]




DOO_A_5(4KFG)
GYRB_ECOLI
[Raw transfer]




19X_B_4(4HY1)
PARE_FRATH
[Raw transfer]




1A1_D_11(4HYP)
GYRB_ECOLI
[Raw transfer]




G3Z_A_2(5MMP)
?
[Raw transfer]




CJC_A_3(4HYM)
PARE_FRATH
[Raw transfer]




1EU_A_3(3FV5)
PARE_ECOLI
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




O54_A_2(5MMN)
?
[Raw transfer]




28G_A_2(4MBC)
?
[Raw transfer]




1A1_C_9(4HYP)
GYRB_ECOLI
[Raw transfer]




28F_A_3(4MB9)
?
[Raw transfer]




2B7_A_2(4MOT)
?
[Raw transfer]




1A1_A_5(4HYP)
GYRB_ECOLI
[Raw transfer]




B46_A_2(3G7E)
GYRB_ECOLI
[Raw transfer]




1AV_B_5(4HZ0)
PARE_ECOLI
[Raw transfer]




1A1_B_7(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_D_4(1S14)
PARE_ECOLI
[Raw transfer]




1AV_A_3(4HZ0)
PARE_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_A_3(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_C_3(1S14)
PARE_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
GYRB_THET8
[Raw transfer]




19Y_A_3(4HXZ)
PARE_FRATH
[Raw transfer]




19Y_A_3(4HXZ)
PARE_FRATH
[Raw transfer]




0RA_A_2(4EM7)
?
[Raw transfer]




NOV_B_4(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_B_4(1KIJ)
GYRB_THET8
[Raw transfer]




4S4_A_2(4ZVI)
GYRB_ECOLI
[Raw transfer]




2 PsiBlast_PDB 78.4160%-101 - C3 -3LNU - ? -
5 PsiBlast_PDB 75.6348% -91 - C3 -4HXZ 5.2 PARE_FRATH
130 HHSearch 75.4560% -45 - C3 -1S16 10.1 PARE_ECOLI
6 PsiBlast_PDB 73.9248% -84 - C3 -4HYM 6.2 PARE_FRATH
7 PsiBlast_PDB 73.5748% -92 - C3 -4KQV 6.7 PARE_FRATH
3 PsiBlast_PDB 71.8040% 36 - C4 -4JUO - PARE_STRPN -
119 HHSearch 71.69100% 0 - C- -2XKJ - ? -
4 PsiBlast_PDB 71.4640% 41 * C4 *4I3H - ? -
131 HHSearch 71.0761% -34 - C3 -3LNU - ? -
135 HHSearch 70.1151% -47 - C3 -4HXZ 5.2 PARE_FRATH
1 PsiBlast_PDB 68.1661% 14 - C3 -1S16 - PARE_ECOLI -
21 PsiBlast_CBE 67.6061% 14 - C3 -1S16 10.1 PARE_ECOLI
117 HHSearch 59.7544% -24 - C4 -4TMA - ? -
127 HHSearch 57.3971% -76 - C4 -5EIX - ? -
140 Fugue 54.4237% 40 - C3 -1KIJ 5.6 GYRB_THET8
133 HHSearch 53.6437% 46 - C3 -3ZKB - GYRB_MYCTU -
50 PsiBlast_CBE 53.5637% 28 - C3 -1KIJ 5.6 GYRB_THET8
49 PsiBlast_CBE 52.9237% 33 - C3 -1KIJ 6.0 GYRB_THET8
128 HHSearch 52.8937% 31 - C3 -1EI1 7.6 GYRB_ECOLI
29 PsiBlast_CBE 52.3833% 47 - C3 -3ZKD - GYRB_MYCTU -
16 PsiBlast_PDB 52.1440% 31 - C3 -4PRX 7.9 GYRB_ECOLI
12 PsiBlast_PDB 52.1140% 36 - C3 -4WUC 10.1 GYRB_ECOLI
138 HHSearch 51.8737% 44 - C3 -1KIJ 6.0 GYRB_THET8
10 PsiBlast_PDB 51.8240% 35 - C3 -4XTJ 10.0 GYRB_ECOLI
9 PsiBlast_PDB 51.7664% -84 - C3 -3FV5 5.6 PARE_ECOLI
11 PsiBlast_PDB 51.7340% 36 - C3 -4WUB 10.1 GYRB_ECOLI
23 PsiBlast_CBE 51.6948% -76 - C3 -4HY1 7.3 PARE_FRATH
141 Fugue 51.0336% 40 - C3 -1EI1 8.1 GYRB_ECOLI
14 PsiBlast_PDB 50.7340% 34 - C3 -1EI1 8.1 GYRB_ECOLI
17 PsiBlast_PDB 50.7240% 30 - C3 -4PU9 7.5 GYRB_ECOLI
24 PsiBlast_CBE 50.7164% -67 - C3 -4HZ0 5.4 PARE_ECOLI
8 PsiBlast_PDB 50.6864% -60 - C3 -4HZ0 5.1 PARE_ECOLI
13 PsiBlast_PDB 50.6140% 37 - C3 -4WUD 10.1 GYRB_ECOLI
20 PsiBlast_PDB 50.2840% 31 - C3 -4ZVI 5.8 GYRB_ECOLI
25 PsiBlast_CBE 50.0864% -75 - C3 -3FV5 5.6 PARE_ECOLI
26 PsiBlast_CBE 49.8040% 34 - C3 -1EI1 7.6 GYRB_ECOLI
15 PsiBlast_PDB 49.6540% 35 - C3 -4PRV 7.5 GYRB_ECOLI
22 PsiBlast_CBE 48.7648% -61 - C3 -4KQV 6.9 PARE_FRATH
52 PsiBlast_CBE 46.7254% -69 - C3 -1S14 5.8 PARE_ECOLI
51 PsiBlast_CBE 45.8854% -65 - C3 -1S14 5.9 PARE_ECOLI
56 PsiBlast_CBE 39.0347% 8 - C3 -4DUH 7.1 GYRB_ECOLI
71 PsiBlast_CBE 37.4247% 1 - C3 -4HYP 7.3 GYRB_ECOLI
53 PsiBlast_CBE 36.9247% 12 - C3 -5MMP 6.8 ?
57 PsiBlast_CBE 36.6447% 19 - C3 -4DUH 6.6 GYRB_ECOLI
72 PsiBlast_CBE 36.3647% 7 - C3 -4HYP 7.0 GYRB_ECOLI
73 PsiBlast_CBE 36.2847% 10 - C3 -4HYP 6.7 GYRB_ECOLI
78 PsiBlast_CBE 36.1049% 5 - C3 -3G7E 6.8 GYRB_ECOLI
74 PsiBlast_CBE 35.9047% 0 - C3 -4HYP 7.3 GYRB_ECOLI
55 PsiBlast_CBE 34.9747% 24 - C3 -5MMN 6.4 ?
70 PsiBlast_CBE 34.7847% 17 - C3 -4KFG 7.2 GYRB_ECOLI
144 Fugue 32.3345% 36 * C3 *1KIJ 5.6 GYRB_THET8
62 PsiBlast_CBE 32.2947% 33 - C3 -4MB9 4.4 ?
64 PsiBlast_CBE 32.1047% 31 - C3 -4EM7 5.2 ?
61 PsiBlast_CBE 31.6947% 37 - C3 -4MBC 5.2 ?
60 PsiBlast_CBE 31.2047% 37 - C3 -4MOT 6.0 ?