@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VP48: (2017-11-19 )
MKDDYILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGGVSGVDLCRRLKRDENLAEIPVLMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRANALSGEKTIDANGLILDPVSQRVSFGNSILDMGPTEYRLLAFFMTHPERAYTRAQLLDQVWGGNVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRFSTRADLAAG

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_B_23(5DCL)
?
[Raw transfer]




ACY_C_3(1NXW)
?
[Raw transfer]




PHS_C_3(1NXP)
?
[Raw transfer]




NACID_G_3(1GXP)

[Raw transfer]

-

NACID_G_3(1GXP)
PHOB_ECOLI
[Raw transfer]

-

NACID_C_1(1GXP)
PHOB_ECOLI
[Raw transfer]

-

NACID_C_1(1GXP)
PHOB_ECOLI
[Raw transfer]

-

NACID_C_2(2Z33)

[Raw transfer]

-

126 HHSearch 83.8336%-129 - C2 -2GWR - MTRA_MYCTU -
12 PsiBlast_PDB 81.0434%-110 - C2 -4KFC - KDPE_ECOLI -
132 HHSearch 80.7528%-155 - C2 -1KGS - ? -
13 PsiBlast_PDB 80.5634%-106 - C2 -4KNY - KDPE_ECOLI -
17 PsiBlast_PDB 80.2733%-141 - C2 -4S04 - ? -
130 HHSearch 79.1832%-145 - C2 -4S04 - ? -
18 PsiBlast_PDB 77.9733%-131 - C2 -4S05 - ? -
8 PsiBlast_PDB 77.4357%-152 - C2 -1ZES - PHOB_ECOLI -
135 HHSearch 77.3529%-141 - C2 -1P2F - ? -
128 HHSearch 77.0735% -72 - C2 -1YS6 - PRRA_MYCTU -
11 PsiBlast_PDB 76.5754%-173 - C2 -2JBA - PHOB_ECOLI -
6 PsiBlast_PDB 76.2055%-163 - C2 -1B00 - PHOB_ECOLI -
129 HHSearch 75.7135% -71 - C2 -1YS7 - PRRA_MYCTU -
33 PsiBlast_CBE 75.4133%-105 - C2 -5ED4 - ? -
16 PsiBlast_PDB 74.6933% -91 - C2 -5ED4 - ? -
2 PsiBlast_PDB 73.9767%-174 - C2 -1GXQ - PHOB_ECOLI -
28 PsiBlast_CBE 73.8753%-167 - C2 -2JBA - PHOB_ECOLI -
7 PsiBlast_PDB 73.7955%-179 - C2 -2IYN - PHOB_ECOLI -
131 HHSearch 72.7737% -49 - C2 -2OQR - REGX3_MYCTU -
34 PsiBlast_CBE 72.7233% -95 - C2 -5ED4 - ? -
22 PsiBlast_CBE 70.9967%-177 - C2 -1GXP 5.1 PHOB_ECOLI
1 PsiBlast_PDB 69.9367%-163 - C2 -1GXP 5.0 PHOB_ECOLI
21 PsiBlast_CBE 68.7367%-162 - C2 -1GXP 4.4
23 PsiBlast_CBE 68.5767%-172 - C2 -1GXP 4.6 PHOB_ECOLI
4 PsiBlast_PDB 67.5568%-161 - C2 -2Z33 5.9
43 PsiBlast_CBE 65.1041%-158 - C2 -1NXW 3.9 ?