@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VP49: (2017-11-19 )
MYEPYPVPEQVREQKLSRYSSLWTFAKQDLRLLLFFLIIAGLVGLGIGYFWSCIFIAFVVFFTLQLRSLYLVNDWIANNPYDVPPNLNGIWGALLFNVYRAQRQERIVQAEMVGLIDRAQSSLVALAEAVVLIDDQHQIEWWNPAAERLLGISPLDRGRNLLTILRQPTFIEYFNNIDQAPDGIKLHSNLDDDRYVQVKLTRFGGESRLLVAYDVTRMHNLEQMRKDFVDNISHELRTPLTVLSGYIETFTDQEDINPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENNKKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITNAIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTGLGLAIVKHVLMQQGAYLDVQSKENEGSTFTAVFPKERLYNMT

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4KP4)
ENVZ_ECOLI
[Raw transfer]



ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]



ADP_A_7(3DGE)
?
[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



AN2_B_4(4U7O)
?
[Raw transfer]



ANP_A_3(4BIW)
CPXA_ECOLI
[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ADP_A_8(4JAV)
?
[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



ADP_A_3(4JAS)
?
[Raw transfer]



ACP_A_3(5C93)
?
[Raw transfer]



ATP_A_5(5LFK)
?
[Raw transfer]



ACP_B_7(5C93)
?
[Raw transfer]



ADP_B_3(4ZKI)
?
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ADP_A_2(4JAU)
?
[Raw transfer]
51 HHSearch 87.3828% - - C4 -4I5S - ? -
1 PsiBlast_PDB 81.7631% - - C4 -4I5S - ? -
41 Fugue 78.1326% - - C4 -4I5S - ? -
53 HHSearch 66.3633% 26 - C4 -4U7O 9.1 ?
4 PsiBlast_PDB 65.7834% 15 - C4 -4ZKI - ? -
3 PsiBlast_PDB 64.6234% 22 - C4 -4U7O 9.1 ?
52 HHSearch 63.1933% 30 - C4 -5C93 - ? -
2 PsiBlast_PDB 63.0434% - - C4 -4U7N - ? -
5 PsiBlast_PDB 62.9534% 23 - C4 -5C93 7.3 ?
58 HHSearch 62.9429% 27 - C4 -4JAV - ? -
18 PsiBlast_PDB 61.3330% 32 - C4 -3DGE 7.1 ?
43 Fugue 61.0422%-115 - C4 -1ID0 - -
57 HHSearch 60.4629% 21 - C4 -2C2A - ? -
19 PsiBlast_PDB 59.9930% 26 - C4 -4JAV 8.5 ?
68 HHSearch 59.8326% -2 - C4 -4BIV - CPXA_ECOLI -
67 HHSearch 58.5326% -7 - C4 -4BIX - CPXA_ECOLI -
12 PsiBlast_PDB 58.2830% 41 - C4 -4JAS 7.5 ?
13 PsiBlast_PDB 57.5730% 20 - C4 -4JAU 6.6 ?
22 PsiBlast_CBE 57.3234% 22 - C4 -4U7O 9.6 ?
23 PsiBlast_CBE 57.2334% 16 - C4 -5C93 7.0 ?
21 PsiBlast_CBE 56.0134% 17 - C4 -4ZKI 6.9 ?
20 PsiBlast_PDB 55.7330% 24 - C4 -2C2A 7.1 ?
14 PsiBlast_PDB 40.3035% 47 - C4 -3SL2 7.6