@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPD8: (2017-11-21 )
MAQYIYTMNRVSKMVPPKREILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFSGEARAQPGIKIGYLEQEPPLDPTKDVRGNVEDGVREALDALERLDQVFAEYADPDADFDALAKEQEKLESIIHAWDAHNLNNQLEIAADALNLPAWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVSWLERFLKDFPGTIVAITHDRYFLDNVAEWILELDRGHGIPYQGNYTSWLEQKNARLEQEQKQEESFAKALKKELEWVRQNAKGQQKKNKARMERFEELNSREFQQRNETSEIYIPPGPRLGNKVVEVENISKSFGDRLLYENLSFTVPPAAIVGIVGPNGAGKTTLFRMMTGEQKPDTGTVTLGDSVKVAYVGQIRDTLDDNKTVWEEVSGGLDILKVGDYEIASRAYIGRFNFKGQDQQKRVGELSGGERNRLQLAKILQQGANVILLDEPSNDLDVETLRALEDAILVFPGTVMVVSHDRWFLDRIATHILSFEDEQPEFYTGNYTEFEAYRRAKLGDDAQPHRKKYKKISG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ADP_A_6(3BK7)
?
[Raw transfer]




ADP_P_6(4CRM)
RLI1_YEAST
[Raw transfer]




24 HHSearch 95.6671% -49 - C1 -3J5S - ETTA_ECOLI -
1 PsiBlast_PDB 95.3171% -47 - C1 -3J5S - ETTA_ECOLI -
2 PsiBlast_PDB 94.9170% -73 - C1 -4FIN - ETTA_ECOLI -
36 HHSearch 52.3526% 8 - C1 -2IW3 - EF3A_YEAST -
13 PsiBlast_PDB 49.5928% -51 - C1 -4HLU - ECFA2_THEMA -
15 PsiBlast_PDB 49.0922% 17 - C1 -3J16 - RLI1_YEAST -
16 PsiBlast_PDB 48.2522% 17 - C1 -4CRM 4.7 RLI1_YEAST
39 HHSearch 48.1826% 17 - C1 -2IX8 - -
45 HHSearch 47.5025% 10 - C1 -1YQT - ? -
7 PsiBlast_PDB 47.0126% 35 - C1 -1YQT - ? -
10 PsiBlast_PDB 46.5026% 18 - C1 -3BK7 5.5 ?
12 PsiBlast_PDB 46.2028% -44 - C1 -4ZIR - ECFA2_THEMA -
11 PsiBlast_PDB 45.6023% 40 - C1 -3OZX - ? -
14 PsiBlast_PDB 44.7028% -49 - C- -2YZ2 - ECFA2_THEMA -
9 PsiBlast_PDB 44.6826% 26 - C1 -5LW7 - ? -
8 PsiBlast_PDB 44.4526% 26 - C1 -3J15 - ? -
50 HHSearch 43.6427% -25 - C1 -4YER - ? -
5 PsiBlast_PDB 43.4529% -71 - C1 -2IW3 - EF3A_YEAST -
49 HHSearch 42.1424% -19 - C1 -2AWN - MALK_ECOLI -
48 HHSearch 42.1424% -20 - C1 -3RLF - MALK_ECOLI -