@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPF6: (2017-11-21 )
MKVRTRIAPSPTGFPHVGTAYIALFNMCFAKQHGGEFILRIEDTDQLRSTPESEKMILDSLRWLGLNWSEGPDVGGPHAPYRQSERMGIYKQYALELVEKGHAFYCFATAEELDQMRAEQQARGETPKYDGRGLKLSQEEVARRLEAGEPHVIRMKVPEEGVCKFNDLLRGEVEIPWAQVDMQVLLKTDGLPTYHLANVVDDHLMEITHVLRGEEWLPSAPKHQLLYQYFGWEMPTLCHMPLLRNPDKSKLSKRKNPTSINYYRDIGVLPEALLNYLGRMGWSMPDEREVFTLQDMMDNFDIQRVSLGGPIFDVEKLNWLNGQWIKGLTPGQLLDRLLTWKSDRSTLEDIAAAIQPRINLLSEAVNWAGFYFNHMPQITAEMFESKKLTQEQVRQSLQFAIWRLESQFTWNNDTVGQTLMDLANQMGIKLRDFMPTFFIAIAGSTSSTPVMQSMVTLGPDLTFARLRHALEIVGAPSKKEVKNWEKLNESLKLPKNEATSEA

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GSU_A_2(3AFH)
SYE2_THEMA
[Raw transfer]




ATP_A_4(1J09)
SYE_THET8
[Raw transfer]




ATP_A_4(1J09)
SYE_THET8
[Raw transfer]




ATP_A_3(1N75)
SYE_THET8
[Raw transfer]




GOL_B_11(5TGT)
SYE_PSEAE
[Raw transfer]




GLU_A_4(4GRI)
SYE_BORBU
[Raw transfer]




GLU_A_4(4GRI)
SYE_BORBU
[Raw transfer]




GLU_B_7(4GRI)
SYE_BORBU
[Raw transfer]




GLU_B_7(4GRI)
SYE_BORBU
[Raw transfer]




GLU_B_2(2CUZ)
SYE_THET8
[Raw transfer]




GLU_A_3(2CFO)
SYE_THEEB
[Raw transfer]




GLU_A_3(2CFO)
SYE_THEEB
[Raw transfer]




33 HHSearch 86.0563%-111 - C2 -5TGT - SYE_PSEAE -
1 PsiBlast_PDB 85.8563%-113 - C2 -5TGT - SYE_PSEAE -
21 PsiBlast_CBE 85.4163%-121 - C2 -5TGT 2.3 SYE_PSEAE
36 HHSearch 81.7548% -69 - C2 -2CV0 - SYE_THET8 -
37 HHSearch 81.3548% -67 - C2 -1J09 7.4 SYE_THET8
9 PsiBlast_PDB 80.8046% -57 - C2 -2CV2 - SYE_THET8 -
11 PsiBlast_PDB 80.4746% -58 - C2 -1G59 - SYE_THET8 -
7 PsiBlast_PDB 80.4246% -56 - C2 -2CV0 - SYE_THET8 -
10 PsiBlast_PDB 80.4146% -55 - C2 -2DXI - SYE_THET8 -
56 Fugue 80.1846% -68 - C2 -1G59 - SYE_THET8 -
22 PsiBlast_CBE 80.1546% -59 - C2 -2DXI - SYE_THET8 -
8 PsiBlast_PDB 79.9646% -56 - C2 -2CV1 - SYE_THET8 -
2 PsiBlast_PDB 79.8746% -56 - C2 -1J09 7.4 SYE_THET8
26 PsiBlast_CBE 79.7546% -59 - C2 -1N78 - SYE_THET8 -
27 PsiBlast_CBE 79.5946% -56 - C2 -1N77 - SYE_THET8 -
24 PsiBlast_CBE 79.5746% -56 - C2 -2CV1 - SYE_THET8 -
12 PsiBlast_PDB 79.5546% -56 - C2 -1GLN - SYE_THET8 -
4 PsiBlast_PDB 79.5446% -56 - C2 -1N77 - SYE_THET8 -
25 PsiBlast_CBE 79.4546% -58 - C2 -2CV0 - SYE_THET8 -
23 PsiBlast_CBE 79.2046% -56 - C2 -2CV2 - SYE_THET8 -
3 PsiBlast_PDB 79.2046% -55 - C2 -1N75 7.0 SYE_THET8
6 PsiBlast_PDB 79.1046% -57 - C2 -2CUZ 3.1 SYE_THET8
28 PsiBlast_CBE 78.2540% -40 - C2 -4GRI 3.7 SYE_BORBU
34 HHSearch 77.5140% -26 - C2 -4GRI 3.7 SYE_BORBU
39 HHSearch 76.9440% -42 - C2 -2CFO 3.0 SYE_THEEB
35 HHSearch 76.8240% -27 - C2 -4GRI 3.6 SYE_BORBU
13 PsiBlast_PDB 76.5940% -41 - C2 -4GRI 3.6 SYE_BORBU
18 PsiBlast_PDB 72.9038% -40 - C2 -2CFO 3.0 SYE_THEEB