@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPG1: (2017-11-21 )
MVDKRTKQTRKKQQSISEKPSLAFDMWRFYLLWAVVLLCFVVLIARAFYVQVINKDFLQNKANANILRTERIEAMRGVISDRHGVPLAISSPIMKIVIDPRDYFETKHLYDQITAELKQDPNNRKLKRQLPDKNLNLDELADVVGVDRADLKKQMNARPRSRYLVLKKEVPPQQADLIMKGNFQGVYAEKTYKRYYPQPQPNAQIIGLTNSEGQGIEGLEMQLNKQLSGVDGEQKIIRDKRGNRLKVSEVIREGEPGENITLSIDSRLQYIMYRELTAAGVANNARSATAIAVDVKTGEILAMTSWPSYNPNDKNGLSNKDAMRNRGAIDMFEPGSTMKPFTISAALETGQYTPNTIVNTSPGSMRLGWHTIRDTHNYGALTVSGVIIKSSNVGSAKIALSLPKETLPSFFNRVGFGKRSAVRFPGESSGLVLPVNKLNSSQIGTMAYGYGLNATILQLAQGYAMLANHGVKMPLSLHKLDQPPKGEQVLNPKIADQVLLMLEQVTMPGGTAKQANIPGYRVGGKTGTAHKLRADGKGYSNNEYRALFAGVAPISDPRLAVIVVVENPQGRYYGGLVAAPVFARIMQESLRLMNVPLDKPLNTPENPIRR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

59J_A_4(5DF9)
?
[Raw transfer]



59F_A_3(5DF8)
?
[Raw transfer]



VPP_A_3(4KQQ)
FTSI_PSEAE
[Raw transfer]



VPP_B_13(4KQR)
FTSI_PSEAE
[Raw transfer]



59F_B_10(5DF8)
?
[Raw transfer]



VPP_A_3(4KQR)
FTSI_PSEAE
[Raw transfer]



VPP_B_8(4KQQ)
FTSI_PSEAE
[Raw transfer]



JPP_B_6(4KQO)
FTSI_PSEAE
[Raw transfer]



JPP_A_3(4KQO)
FTSI_PSEAE
[Raw transfer]



59H_B_7(5DF7)
?
[Raw transfer]



59H_A_3(5DF7)
?
[Raw transfer]



CTJ_A_2(3OCN)
?
[Raw transfer]
6 PsiBlast_PDB 74.7341% -27 - C2 -5DF8 6.1 ?
4 PsiBlast_PDB 74.7341% -29 - C2 -4KQR 7.8 FTSI_PSEAE
7 PsiBlast_PDB 74.5841% -31 - C2 -5DF9 8.8 ?
23 PsiBlast_CBE 74.5341% -30 - C2 -4KQR 7.6 FTSI_PSEAE
5 PsiBlast_PDB 74.4541% -29 - C2 -5DF7 5.1 ?
3 PsiBlast_PDB 74.3741% -28 - C2 -4KQQ 7.1 FTSI_PSEAE
2 PsiBlast_PDB 74.3241% -27 - C2 -4KQO 5.6 FTSI_PSEAE
38 Fugue 74.3142% -29 - C2 -3OC2 - ? -
1 PsiBlast_PDB 74.1041% -28 - C2 -3OCN 3.6 ?
22 PsiBlast_CBE 73.5841% -34 - C2 -5DF7 4.5 ?
24 PsiBlast_CBE 73.3841% -34 - C2 -4KQQ 7.6 FTSI_PSEAE
21 PsiBlast_CBE 73.3241% -31 - C2 -5DF8 7.0 ?
25 PsiBlast_CBE 72.7841% -31 - C2 -4KQO 6.1 FTSI_PSEAE
18 PsiBlast_PDB 67.6226% - - C2 -1PMD - PBPX_STRPN -
10 PsiBlast_PDB 65.2135% 7 - C2 -5KSH - PBP2_NEIGO -
11 PsiBlast_PDB 64.3035% 1 - C2 -3EQU - PBP2_NEIGO -
9 PsiBlast_PDB 64.0635% 8 - C2 -3EQV - PBP2_NEIGO -
17 PsiBlast_PDB 63.3826% 0 - C- -1QMF - PBPX_STRPN -
16 PsiBlast_PDB 62.5126% 0 - C- -1QME - PBPX_STRPN -
20 PsiBlast_PDB 62.2525% 48 - C2 -5U47 - ? -