@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPG3: (2017-11-21 )
MHTSTTSTVPLEPWIAQQLQQATQGYWHKDQIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAPTLINRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIREAAKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDIVKGLEQAQGAKGRLNFIQKAPHLFIDDTYNANPTSMRAAAQVLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAGLPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEKL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IGM_A_2(3ZM5)
?
[Raw transfer]




ANP_A_6(4CVM)
?
[Raw transfer]




ANP_A_6(4CVM)
?
[Raw transfer]




1LG_A_2(2AM1)
?
[Raw transfer]




ALA_A_2(4CVM)
?
[Raw transfer]




2LG_A_2(2AM2)
?
[Raw transfer]




ATP_A_2(4QDI)
?
[Raw transfer]




UDP_A_3(4QDI)
?
[Raw transfer]




API_A_6(4CVK)
?
[Raw transfer]




UDP_A_3(4CVK)
?
[Raw transfer]




ADP_A_3(3ZL8)
?
[Raw transfer]




ALA_A_2(4CVK)
?
[Raw transfer]




MUB_A_4(4CVK)
?
[Raw transfer]




MUB_A_4(4CVK)
?
[Raw transfer]




1 PsiBlast_PDB 94.4598%-113 - C1 -4ZIY - ? -
2 PsiBlast_PDB 94.3398%-106 - C1 -4QDI 2.8 ?
32 HHSearch 94.0598%-103 - C1 -4QDI 8.9 ?
34 HHSearch 65.3540% -59 - C1 -1GG4 - -
37 HHSearch 62.4342% -31 - C1 -4CVK 2.1 ?
3 PsiBlast_PDB 61.8740% -61 - C1 -1GG4 - MURF_ECOLI -
38 HHSearch 61.4942% -11 - C1 -4CVM 7.1 ?
5 PsiBlast_PDB 56.9642% -3 - C1 -4CVM 7.1 ?
4 PsiBlast_PDB 56.5642% -4 - C1 -4CVK 6.4 ?
35 HHSearch 55.1327% -62 - C1 -3ZM6 - ? -
6 PsiBlast_PDB 55.0531% -71 - C1 -3ZL8 7.6 ?
39 HHSearch 53.3328% -43 - C1 -3ZL8 - ? -
36 HHSearch 51.6527% -61 - C1 -2AM1 - ? -
8 PsiBlast_PDB 51.4930% -74 - C1 -3ZM6 - ? -
7 PsiBlast_PDB 49.0330% -74 - C1 -3ZM5 7.1 ?
9 PsiBlast_PDB 47.6929% -74 - C1 -2AM1 5.7 ?
10 PsiBlast_PDB 45.3329% -78 - C1 -2AM2 5.4 ?
42 HHSearch 42.1121% 1 - C1 -4BUB - MURE_THEMA -
48 HHSearch 32.4619% -8 - C1 -1GQY - MURC_HAEIN -
54 HHSearch 31.5421% -8 - C1 -4HV4 - MURC_YERPE -