@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPI8: (2017-11-21 )
MIEPVTAMTTLSNSVSKPDIDDVNIKSIQTLVTPAELKSELPLSDVASQTVLKGRETIRNILDGSDKCLFVVIGPCSIHDPKAAHEYADRLKALSEKVKDTLYLVMRVYFEKPRTTIGWKGLINDPDMNDSFNIEKGLRIGRKLLLDLNEKGLPCATEALDPNSPQYYQDLISWSAIGARTTESQTHREMSSGLSSPVGFKNGTDGGLTVATNAMQSVKYGHSFLGLNEDGQVSIINTKGNPYAHVVLRGGNGKPNYDAGSVAEAENALAKAKVSSKIMIDASHANSNKDPYLQPLVLKNITEQILDGNKSIVGIMVESHLKGGRQDIPDNLCDLEYGKSVTDGCIDWETTEKTLLEMHKALKEVLPNR

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEP_A_4(1OFA)
AROG_YEAST
[Raw transfer]




PEP_B_7(1OFA)
AROG_YEAST
[Raw transfer]




PGA_A_3(1OFO)
AROG_YEAST
[Raw transfer]




GOL_B_9(1OFA)
AROG_YEAST
[Raw transfer]




G3P_B_10(1OF8)
AROG_YEAST
[Raw transfer]




G3P_B_10(1OF8)
AROG_YEAST
[Raw transfer]




G3P_A_5(1OF8)
AROG_YEAST
[Raw transfer]




EDO_D_19(5D04)
?
[Raw transfer]




4 PsiBlast_PDB 94.6254% -88 - C4 -5CKS - AROG_ECOLI -
32 PsiBlast_CBE 93.7354% -84 - C4 -5CKS - AROG_ECOLI -
114 HHSearch 93.4154% -79 - C4 -1KFL - AROG_ECOLI -
132 Fugue 93.2254% -79 - C4 -1QR7 - AROG_ECOLI -
31 PsiBlast_CBE 93.2054% -82 - C4 -5CKS - AROG_ECOLI -
118 HHSearch 93.1253% -79 - C4 -1N8F - AROG_ECOLI -
3 PsiBlast_PDB 93.1054% -81 - C4 -1N8F - AROG_ECOLI -
21 PsiBlast_CBE 92.9154% -80 - C4 -1QR7 - AROG_ECOLI -
1 PsiBlast_PDB 92.8754% -80 - C4 -1QR7 - AROG_ECOLI -
25 PsiBlast_CBE 92.4054% -81 - C4 -1GG1 - AROG_ECOLI -
2 PsiBlast_PDB 92.3554% -80 - C4 -1GG1 - AROG_ECOLI -
29 PsiBlast_CBE 92.2854% -82 - C4 -1N8F - AROG_ECOLI -
28 PsiBlast_CBE 92.2154% -84 - C4 -1N8F - AROG_ECOLI -
30 PsiBlast_CBE 92.1554% -85 - C4 -5CKS - AROG_ECOLI -
27 PsiBlast_CBE 91.8854% -82 - C4 -1N8F - AROG_ECOLI -
22 PsiBlast_CBE 91.7954% -80 - C4 -1QR7 - AROG_ECOLI -
26 PsiBlast_CBE 91.7154% -81 - C4 -1GG1 - AROG_ECOLI -
23 PsiBlast_CBE 91.6354% -81 - C4 -1QR7 - AROG_ECOLI -
24 PsiBlast_CBE 91.5354% -82 - C4 -1GG1 - AROG_ECOLI -
116 HHSearch 91.3553% -78 - C4 -5DCB - ? -
115 HHSearch 91.0453% -75 - C4 -5D04 2.5 ?
101 PsiBlast_CBE 88.8450% -71 * C4 *1OFO 4.1 AROG_YEAST
113 HHSearch 88.3150% -66 - C4 -1OF8 3.0 AROG_YEAST
105 PsiBlast_CBE 88.2250% -68 - C4 -1OF8 3.0 AROG_YEAST
106 PsiBlast_CBE 87.9250% -69 - C4 -1OF8 3.2 AROG_YEAST
104 PsiBlast_CBE 87.7950% -70 - C4 -1OFA 5.6 AROG_YEAST
103 PsiBlast_CBE 87.2950% -69 - C4 -1OFA 5.5 AROG_YEAST