@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPK3: (2017-11-21 )
MAYDDQNIFAKILRGELPAIKLYEDDQVLAFMDIMPQADGHALVIPKTPAVTLLDLPPEAAAYTIQIVQKIAKAMETALNLDGIVLMQLSGAAAGQTVPHVHFHLIPTNVHQLGKHAAQLGDQDKIKALAEKIKAAL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5GP_C_3(3RHN)
HINT1_RABIT
[Raw transfer]




AMP_F_13(4ZGL)
YHIT_HELPY
[Raw transfer]




AMP_B_11(4ZGL)
YHIT_HELPY
[Raw transfer]




AMP_A_3(3OMF)
HIT_ENTHI
[Raw transfer]




ADN_A_2(3O1C)
HINT1_RABIT
[Raw transfer]




5GP_A_3(3OXK)
HIT_ENTHI
[Raw transfer]




MPD_A_4(3R6F)
?
[Raw transfer]




UNL_D_8(3LB5)
?
[Raw transfer]




UNL_B_6(3LB5)
?
[Raw transfer]




UNL_D_8(3LB5)
?
[Raw transfer]




UNL_A_5(3LB5)
?
[Raw transfer]




UNL_C_7(3LB5)
?
[Raw transfer]




EDO_A_6(3P0T)
?
[Raw transfer]




21 PsiBlast_CBE 90.7550%-113 - C2 -3LB5 2.9 ?
23 PsiBlast_CBE 90.5150%-106 - C2 -3LB5 2.7 ?
1 PsiBlast_PDB 90.3450%-116 - C2 -3LB5 2.7 ?
135 HHSearch 90.1350%-116 - C2 -3LB5 2.9 ?
22 PsiBlast_CBE 86.8750% -92 - C2 -3LB5 2.8 ?
134 HHSearch 80.3637%-176 - C2 -3IMI - ? -
132 HHSearch 79.5335%-141 - C2 -3L7X - ? -
2 PsiBlast_PDB 78.9945%-208 - C2 -3IMI - ? -
133 HHSearch 78.2634%-134 - C2 -3P0T 2.5 ?
35 PsiBlast_CBE 74.8535%-192 - C2 -4ZGL 4.8 YHIT_HELPY
33 PsiBlast_CBE 74.6935%-193 - C2 -4ZGL - YHIT_HELPY -
27 PsiBlast_CBE 74.3145%-154 - C2 -3O0M - ? -
3 PsiBlast_PDB 73.8945%-150 - C2 -3O0M - ? -
144 HHSearch 73.7334%-185 - C2 -4ZGL - YHIT_HELPY -
34 PsiBlast_CBE 73.6835%-187 - C2 -4ZGL - YHIT_HELPY -
8 PsiBlast_PDB 73.4235%-188 - C2 -4ZGL - YHIT_HELPY -
38 PsiBlast_CBE 73.2436%-168 - C2 -3P0T - ? -
4 PsiBlast_PDB 73.0542%-178 - C2 -3L7X - ? -
37 PsiBlast_CBE 72.7135%-188 - C2 -4ZGL 5.0 YHIT_HELPY
131 HHSearch 72.5035%-140 - C2 -3KSV - ? -
10 PsiBlast_PDB 66.2536%-195 - C2 -3OMF 4.7 HIT_ENTHI
149 HHSearch 62.8133%-143 - C2 -3RHN 5.5 HINT1_RABIT
152 HHSearch 59.5633%-138 * C2 *3O1C 4.7 HINT1_RABIT