@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPT8: (2017-11-23 )
MAEFSIIDQYFNRQSHPDVALGIGDDSALITPPPNQQLVICADTLVAGRHFPLETLSHAIGWKSVAVNLSDIAAMGAKPHSILLAISLPQVDHEWLEGFSQGIYDCCNQFGVALIGGDTTQGPHLTITVTAMGWIETGKAVLRSGAKVGDYVCVSGQIGDAAYGLQHLGHSLQQRLDYPTPRCKLGEELKGLASSMIDVSDGLAQDLGHILKASKVGARLILEKLPVDPVLQQLEEQQRWQYALAGGDDYELCFTITPQNYEKLLQKQLDVKITMIGQIVEQTKLTFEHLGSDYPLQIHGYQHFA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_15(5CC8)
?
[Raw transfer]




ANP_A_3(5DD7)
?
[Raw transfer]




ANP_A_3(5CC8)
?
[Raw transfer]




ATP_A_11(3C9R)
THIL_AQUAE
[Raw transfer]




ADP_B_15(5CM7)
?
[Raw transfer]




ATP_B_12(3C9R)
THIL_AQUAE
[Raw transfer]




ADP_B_15(5CM7)
?
[Raw transfer]




ACP_A_9(3C9S)
THIL_AQUAE
[Raw transfer]




ADP_A_3(5CM7)
?
[Raw transfer]




ADP_A_11(5D9U)
?
[Raw transfer]




ADP_A_7(5D9U)
?
[Raw transfer]




ACP_B_15(3C9T)
THIL_AQUAE
[Raw transfer]




TPP_B_16(3C9U)
THIL_AQUAE
[Raw transfer]




TPP_B_16(3C9U)
THIL_AQUAE
[Raw transfer]




TPP_A_13(3C9U)
THIL_AQUAE
[Raw transfer]




TPP_A_13(3C9U)
THIL_AQUAE
[Raw transfer]




PG4_A_10(3MCQ)
?
[Raw transfer]




PG4_A_10(3MCQ)
?
[Raw transfer]




4 PsiBlast_PDB 98.3099%-124 - C3 -5DD7 - ? -
21 PsiBlast_CBE 98.2199%-127 - C3 -5D9U 3.1 ?
2 PsiBlast_PDB 97.6799%-124 - C3 -5CC8 3.3 ?
22 PsiBlast_CBE 97.4399%-124 - C3 -5CM7 2.8 ?
1 PsiBlast_PDB 97.2699%-128 - C3 -5CM7 2.8 ?
24 PsiBlast_CBE 97.1599%-123 - C3 -5DD7 3.5 ?
3 PsiBlast_PDB 97.1399%-127 - C3 -5D9U 2.8 ?
23 PsiBlast_CBE 96.7299%-123 - C3 -5CC8 3.5 ?
29 HHSearch 89.6498% -75 - C3 -5CM7 2.8 ?
5 PsiBlast_PDB 65.7743% -71 - C3 -3MCQ 2.8 ?
30 HHSearch 58.8143% -24 - C3 -3MCQ 2.9 ?
6 PsiBlast_PDB 53.2031% -17 - C3 -3C9R 3.9 THIL_AQUAE
32 HHSearch 52.5133% -15 - C3 -3C9U 4.9 THIL_AQUAE
25 PsiBlast_CBE 51.7931% -17 - C3 -3C9U 3.2 THIL_AQUAE
8 PsiBlast_PDB 51.7731% -12 - C3 -3C9T 4.1 THIL_AQUAE
27 PsiBlast_CBE 51.7431% -14 - C3 -3C9S 4.3 THIL_AQUAE
7 PsiBlast_PDB 51.6931% -20 - C3 -3C9S - THIL_AQUAE -
28 PsiBlast_CBE 51.5231% -21 - C3 -3C9R 4.2 THIL_AQUAE
9 PsiBlast_PDB 50.9631% -18 - C3 -3C9U 3.3 THIL_AQUAE
53 Fugue 50.4532% 7 - C3 -3C9U 4.8 THIL_AQUAE