@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPU1: (2017-11-23 )
MPLSRVEELVADIRAGKMVILMDDEDRENEGDLVIAATHVRPEDINFMITHARGLVCLTLSRERCKQLNLPLMVDQNGAQHGTNFTLSIEAAEGITTGISAAERAHTIQAAVAAHAKPTDIVQPGHIFPLMAQPGGVLHRAGHTEAGCDLARLAGLEPASVICEIIKEDGTMARRADLEIFAEKHGLKIGTIADLIHYRMTNEQTVERLDQRTIQTEYGSFELYLYREIGNPDIHLALVKGEPKEGVTTVRVHGFSPVRDLLKLNKADGEPAWNLDRALQTIAASDRGVLVWIGQDHLQDLGPALDDLTKPKPVKSNAALSHQYQTIGVGAQILRDLGVEKMKLLSSPLRFNALSGFNLEVVEYVTADQITTK

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5RP_A_3(4P77)
RIBB_VIBCH
[Raw transfer]




5RP_B_5(4P77)
RIBB_VIBCH
[Raw transfer]




5SP_A_3(3LQU)
RIBB_SALTY
[Raw transfer]




RES_A_3(4P6C)
RIBB_VIBCH
[Raw transfer]




RES_B_4(4P6C)
RIBB_VIBCH
[Raw transfer]




5RP_A_3(4P8E)
RIBB_VIBCH
[Raw transfer]




GOL_A_5(1K4O)
RIB3_MAGO7
[Raw transfer]




5RP_D_4(1TKU)
RIB3_CANAL
[Raw transfer]




5RP_B_8(4P8E)
RIBB_VIBCH
[Raw transfer]




5RP_D_4(1TKU)
RIB3_CANAL
[Raw transfer]




GOL_A_5(1K4O)
RIB3_MAGO7
[Raw transfer]




5RP_C_3(1TKU)
RIB3_CANAL
[Raw transfer]




5RP_A_2(2RIU)
RIB3_CANAL
[Raw transfer]




GOL_B_10(3MIO)
RIBBA_MYCTA
[Raw transfer]




GOL_A_5(3MIO)
RIBBA_MYCTA
[Raw transfer]




GOL_A_5(3MIO)
RIBBA_MYCTA
[Raw transfer]




GOL_B_12(3MIO)
RIBBA_MYCTA
[Raw transfer]




GOL_B_12(3MIO)
RIBBA_MYCTA
[Raw transfer]




EDO_A_3(4P6D)
RIBB_VIBCH
[Raw transfer]




1 PsiBlast_PDB 82.6940% -57 - C3 -4I14 - RIBBA_MYCTA -
6 PsiBlast_PDB 75.4550%-135 - C3 -3LRJ - RIBB_SALTY -
48 HHSearch 74.6052%-127 - C3 -1G57 - RIBB_ECOLI -
38 HHSearch 74.4545%-124 - C3 -4FFJ - ? -
3 PsiBlast_PDB 74.2751%-127 - C3 -1G57 - RIBB_ECOLI -
7 PsiBlast_PDB 74.2550%-124 - C3 -3LS6 - RIBB_SALTY -
12 PsiBlast_PDB 73.9445%-124 - C3 -4FFJ - ? -
19 PsiBlast_PDB 73.3646%-102 - C3 -1TKS - RIB3_CANAL -
20 PsiBlast_PDB 73.1746%-100 - C3 -1TKU 3.0 RIB3_CANAL
35 PsiBlast_CBE 73.1546%-103 - C3 -1TKU 3.1 RIB3_CANAL
13 PsiBlast_PDB 72.9845%-114 - C3 -4P6C 4.8 RIBB_VIBCH
33 PsiBlast_CBE 72.9445%-116 - C3 -4P6C 4.8 RIBB_VIBCH
8 PsiBlast_PDB 72.9351%-119 - C3 -3H07 - RIBB_YERPE -
27 PsiBlast_CBE 72.8950%-125 - C3 -3LQU - RIBB_SALTY -
31 PsiBlast_CBE 72.7945%-118 - C3 -4P6P - RIBB_VIBCH -
15 PsiBlast_PDB 72.7345%-119 - C3 -4P6P - RIBB_VIBCH -
17 PsiBlast_PDB 72.7245%-117 - C3 -4P8E 3.9 RIBB_VIBCH
40 HHSearch 72.6546%-102 - C3 -1TKU 3.1 RIB3_CANAL
34 PsiBlast_CBE 72.6046%-103 - C3 -2RIU 3.6 RIB3_CANAL
5 PsiBlast_PDB 72.5950%-121 - C3 -3LQU 3.5 RIBB_SALTY
29 PsiBlast_CBE 72.3945%-116 - C3 -4P8E 4.0 RIBB_VIBCH
16 PsiBlast_PDB 72.1545%-116 - C3 -4P77 4.7 RIBB_VIBCH
30 PsiBlast_CBE 71.8845%-123 - C3 -4P77 5.1 RIBB_VIBCH
44 HHSearch 71.7842% -88 - C3 -1K4O 3.5 RIB3_MAGO7
14 PsiBlast_PDB 71.1045%-123 - C3 -4P6D 2.7 RIBB_VIBCH
37 PsiBlast_CBE 70.3040% -91 - C3 -1K4O 3.5 RIB3_MAGO7
10 PsiBlast_PDB 69.8349% -97 - C3 -3MIO 2.9 RIBBA_MYCTA
47 HHSearch 68.9749% -98 - C3 -3MIO 2.9 RIBBA_MYCTA
28 PsiBlast_CBE 68.7749% -98 - C3 -3MIO 3.1 RIBBA_MYCTA
46 HHSearch 67.8849% -98 - C3 -3MIO 2.7 RIBBA_MYCTA