@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPU3: (2017-11-23 )
MREIILISFLGPDQPNQFTRLMQVLSVHSLQILDVGQAVIHNQLTLGIVVASENETATALAMKEILILAHDIGLTVRFKPISGAEYDQWVSEGGRTRYIVTALAPELTAAHLQAVTQIVSSQGFNIETVTRLSGRVDLEKDSTLPRRACVQFGLSSGPTLDAQAMRAACLLLSSELNIDVAVQEDNAYRRNRRLVCFDMDSTLIEQEVIDELALEAGVGEQVAEITERAMQGELDFQQSFRARVALLKGLDASVLPKIAERLTITEGAERLISTLKVLGYKTAILSGGFQYFAEYLQAKLGIDEVHANVLDVQDGVVTGEVKGVIVDGARKAELLRELANKLGISLEQAMAVGDGANDLPMLAIAGLGVAYRAKPLVRQNANQAISSVGLDGVLYLLGMHDKDLSRA

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_4(3P96)
SERB_MYCA1
[Raw transfer]




EDO_A_3(5JJB)
SERB_MYCA1
[Raw transfer]




EDO_A_4(3P96)
SERB_MYCA1
[Raw transfer]




EDO_A_3(5JLR)
SERB_MYCA1
[Raw transfer]




SER_A_2(5JMA)
SERB_MYCA1
[Raw transfer]




SER_F_6(1L8O)
SERB_HUMAN
[Raw transfer]




AF3_A_9(1L7N)
SERB_METJA
[Raw transfer]




SER_E_5(1L8O)
SERB_HUMAN
[Raw transfer]




76 HHSearch 82.7940% -24 - C2 -5JLP - SERB_MYCA1 -
5 PsiBlast_PDB 82.6840% -53 - C2 -5JMA 2.0 SERB_MYCA1
6 PsiBlast_PDB 82.1339% -54 - C2 -5IT4 - SERB_MYCA1 -
95 Fugue 82.0239% -18 - C2 -3P96 2.3 SERB_MYCA1
3 PsiBlast_PDB 81.9640% -45 - C2 -5JLP - SERB_MYCA1 -
1 PsiBlast_PDB 81.7840% -46 - C2 -3P96 2.3 SERB_MYCA1
75 HHSearch 81.7640% -22 - C2 -5IS2 - SERB_MYCA1 -
4 PsiBlast_PDB 81.2240% -48 - C2 -5JLR 2.3 SERB_MYCA1
8 PsiBlast_PDB 81.2039% -48 - C2 -5JJB 2.5 SERB_MYCA1
9 PsiBlast_PDB 80.9939% -47 - C2 -5IT0 - SERB_MYCA1 -
2 PsiBlast_PDB 80.6540% -46 - C2 -5IS2 - SERB_MYCA1 -
7 PsiBlast_PDB 79.3239% -46 - C2 -5T41 - SERB_MYCA1 -
77 HHSearch 69.3937%-119 - C2 -3N28 - SERB_VIBCH -
97 Fugue 69.0533%-143 - C2 -4EZE - ? -
10 PsiBlast_PDB 67.5346%-120 - C2 -3N28 - SERB_VIBCH -
79 HHSearch 67.3045%-106 - C2 -1L7M - SERB_METJA -
96 Fugue 67.0834%-107 - C2 -3N28 - SERB_VIBCH -
13 PsiBlast_PDB 67.0144%-106 - C2 -1L7M - SERB_METJA -
80 HHSearch 66.3945%-105 - C2 -1F5S - SERB_METJA -
98 Fugue 66.2944%-104 * C2 *1F5S - SERB_METJA -
14 PsiBlast_PDB 65.9744%-106 - C2 -1L7N 2.9 SERB_METJA
23 PsiBlast_CBE 39.4933% -21 - C2 -1L8O 3.3 SERB_HUMAN
19 PsiBlast_PDB 38.1433% -28 - C2 -1L8O 2.9 SERB_HUMAN