@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPX3: (2017-11-23 )
MTQQAQTIQGSIVAIVTPMLKDGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLAEIPNIVGIKDATGDVPRGKALIDALNGKMAVYSGDDETAWELMLLGADGNISVTANIAPKAMSEVCAVAIAKDEQQAKTLNNKIANLHNILFCESNPIPVKWALHEMGLIDTGIRLPLTPLAEQYREPLRNALKDAGII

Atome Classification :

(66 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEG_A_9(3RK8)
?
[Raw transfer]




EDO_A_6(3SI9)
DAPA_BARHE
[Raw transfer]




GOL_B_12(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_D_17(3DAQ)
DAPA_STAAR
[Raw transfer]




LYS_A_5(3PUO)
DAPA_PSEAE
[Raw transfer]




GOL_B_8(3TAK)
?
[Raw transfer]




MES_A_8(3VFL)
?
[Raw transfer]




3OH_B_4(3S8H)
DAPA_PSEAE
[Raw transfer]




MES_B_12(3VFL)
?
[Raw transfer]




3VN_B_13(5F1V)
DAPA_CAMJE
[Raw transfer]




GOL_B_7(3PUE)
?
[Raw transfer]




3VN_D_17(5F1U)
DAPA_CAMJE
[Raw transfer]




3VN_A_8(5F1V)
DAPA_CAMJE
[Raw transfer]




3VN_A_5(5F1U)
DAPA_CAMJE
[Raw transfer]




3VN_B_13(5F1V)
DAPA_CAMJE
[Raw transfer]




3VN_D_17(5F1U)
DAPA_CAMJE
[Raw transfer]




3VN_A_8(5F1V)
DAPA_CAMJE
[Raw transfer]




LYS_B_7(1YXD)
DAPA_ECOLI
[Raw transfer]




LYS_B_7(1YXD)
DAPA_ECOLI
[Raw transfer]




3VN_A_5(5F1U)
DAPA_CAMJE
[Raw transfer]




GOL_B_4(3DI0)
DAPA_STAAC
[Raw transfer]




GOL_B_11(3DAQ)
DAPA_STAAR
[Raw transfer]




DLY_A_7(2ATS)
DAPA_ECOLI
[Raw transfer]




GOL_D_16(3DAQ)
DAPA_STAAR
[Raw transfer]




DLY_A_7(2ATS)
DAPA_ECOLI
[Raw transfer]




GOL_B_11(3I7S)
DAPA_ECOLI
[Raw transfer]




LYS_B_9(5T25)
DAPA_ECOLI
[Raw transfer]




GOL_B_9(3I7Q)
DAPA_ECOLI
[Raw transfer]




GOL_A_3(3DI0)
DAPA_STAAC
[Raw transfer]




GOL_B_10(3G0S)
DAPA_SALTY
[Raw transfer]




GOL_B_13(3I7R)
DAPA_ECOLI
[Raw transfer]




GOL_B_22(3FLU)
DAPA_NEIMB
[Raw transfer]




6GT_A_4(5J5D)
DAPA_MYCTU
[Raw transfer]




GOL_B_7(3PUL)
?
[Raw transfer]




6GT_A_4(5J5D)
DAPA_MYCTU
[Raw transfer]




GOL_B_11(5T26)
DAPA_ECOLI
[Raw transfer]




PYR_A_3(3DI1)
DAPA_STAAC
[Raw transfer]




PYR_B_4(3DI1)
DAPA_STAAC
[Raw transfer]




GOL_B_13(3I7R)
DAPA_ECOLI
[Raw transfer]




GOL_B_22(3FLU)
DAPA_NEIMB
[Raw transfer]




GOL_B_11(3I7S)
DAPA_ECOLI
[Raw transfer]




GOL_B_10(3G0S)
DAPA_SALTY
[Raw transfer]




GOL_B_9(3I7Q)
DAPA_ECOLI
[Raw transfer]




GOL_A_7(3VFL)
?
[Raw transfer]




LYS_A_3(4PFM)
?
[Raw transfer]




LYS_A_4(4PFM)
?
[Raw transfer]




LYS_B_9(5T25)
DAPA_ECOLI
[Raw transfer]




LYS_B_9(4DPQ)
DAPA2_ARATH
[Raw transfer]




LYS_A_6(4DPQ)
DAPA2_ARATH
[Raw transfer]




LYS_B_6(3PUO)
DAPA_PSEAE
[Raw transfer]




LYS_B_7(4PFM)
?
[Raw transfer]




EDO_A_6(3SI9)
DAPA_BARHE
[Raw transfer]




EDO_B_8(3SI9)
DAPA_BARHE
[Raw transfer]




24 PsiBlast_CBE 97.48100%-101 - C3 -3TDF - ? -
28 PsiBlast_CBE 97.15100%-100 - C3 -3PUL 2.8 ?
5 PsiBlast_PDB 96.93100% -97 - C3 -3TAK - ? -
1 PsiBlast_PDB 96.59100%-104 - C3 -3PUD - ? -
6 PsiBlast_PDB 96.56100% -97 - C3 -3TCE - ? -
30 PsiBlast_CBE 96.53100% -97 - C3 -3PUD - ? -
26 PsiBlast_CBE 96.49100% -98 - C3 -3TAK - ? -
152 HHSearch 96.24100% -99 - C3 -3TAK 2.7 ?
29 PsiBlast_CBE 96.21100% -98 - C3 -3PUE 2.9 ?
10 PsiBlast_PDB 96.21100% -99 - C3 -4DXV - ? -
4 PsiBlast_PDB 96.16100%-100 - C3 -3RK8 - ? -
8 PsiBlast_PDB 95.75100% -98 - C3 -3U8G - ? -
2 PsiBlast_PDB 95.54100%-101 - C3 -3PUE - ? -
3 PsiBlast_PDB 95.53100%-100 - C3 -3PUL - ? -
9 PsiBlast_PDB 95.49100% -98 - C3 -3UQN - ? -
153 HHSearch 95.45100% -99 - C3 -3U8G - ? -
27 PsiBlast_CBE 95.44100%-101 - C3 -3RK8 Error ?
7 PsiBlast_PDB 95.35100% -97 - C3 -3TDF - ? -
22 PsiBlast_CBE 95.17100%-100 - C3 -3UQN - ? -
25 PsiBlast_CBE 94.53100%-100 - C3 -3TCE - ? -
151 HHSearch 84.1161%-103 - C3 -3S8H 3.6 DAPA_PSEAE
35 PsiBlast_CBE 82.9660%-107 - C3 -3PUO 2.5 DAPA_PSEAE
39 PsiBlast_CBE 81.7254% -96 - C3 -4PFM 3.3 ?
148 HHSearch 81.5650% -99 - C3 -3FLU 2.1 DAPA_NEIMB
45 PsiBlast_CBE 81.2451% -97 - C3 -1YXD 3.4 DAPA_ECOLI
156 HHSearch 81.2054% -97 - C3 -4PFM 3.6 ?
46 PsiBlast_CBE 81.1751% -95 - C3 -1YXD 3.5 DAPA_ECOLI
59 PsiBlast_CBE 80.9450% -98 - C3 -5T25 3.1 DAPA_ECOLI
61 PsiBlast_CBE 80.8650% -99 - C3 -5T26 3.0 DAPA_ECOLI
53 PsiBlast_CBE 80.8550%-100 - C3 -3I7Q 3.0 DAPA_ECOLI
42 PsiBlast_CBE 80.8551% -99 - C3 -3FLU 2.0 DAPA_NEIMB
43 PsiBlast_CBE 80.6451% -96 - C3 -2ATS 4.0 DAPA_ECOLI
60 PsiBlast_CBE 80.6050%-101 - C3 -5T25 3.3 DAPA_ECOLI
50 PsiBlast_CBE 80.3450% -97 - C3 -3I7S 2.1 DAPA_ECOLI
51 PsiBlast_CBE 80.1850% -96 - C3 -3I7R 3.0 DAPA_ECOLI
49 PsiBlast_CBE 79.9850% -94 - C3 -3I7S 2.1 DAPA_ECOLI
44 PsiBlast_CBE 79.7951% -94 - C3 -2ATS 3.2 DAPA_ECOLI
52 PsiBlast_CBE 79.3750% -95 - C3 -3I7R 2.1 DAPA_ECOLI
54 PsiBlast_CBE 79.2950% -97 - C3 -3I7Q 2.1 DAPA_ECOLI
63 PsiBlast_CBE 77.6448% -98 - C3 -3G0S 2.2 DAPA_SALTY
64 PsiBlast_CBE 77.6348% -95 - C3 -3G0S 2.1 DAPA_SALTY
157 HHSearch 70.8339% -57 - C3 -3SI9 2.9 DAPA_BARHE
168 HHSearch 68.7134%-103 - C3 -5J5D 2.6 DAPA_MYCTU
125 PsiBlast_CBE 66.1135% -80 - C3 -4DPQ 3.4 DAPA2_ARATH
124 PsiBlast_CBE 62.9235% -80 - C3 -4DPQ 3.4 DAPA2_ARATH
115 PsiBlast_CBE 62.8936%-106 - C3 -5J5D 2.6 DAPA_MYCTU
107 PsiBlast_CBE 62.8737% -64 - C3 -3DAQ 3.0 DAPA_STAAR
109 PsiBlast_CBE 62.8037% -63 - C3 -3DAQ 2.8 DAPA_STAAR
102 PsiBlast_CBE 62.7239% -3 - C3 -3SI9 3.0 DAPA_BARHE
110 PsiBlast_CBE 62.6937% -65 - C3 -3DAQ Error DAPA_STAAR
108 PsiBlast_CBE 62.3837% -64 - C3 -3DAQ Error DAPA_STAAR
103 PsiBlast_CBE 62.1339% -68 - C3 -3VFL 3.3 ?
112 PsiBlast_CBE 61.9837% -68 - C3 -3DI1 3.3 DAPA_STAAC
114 PsiBlast_CBE 61.8737% -69 - C3 -3DI0 3.5 DAPA_STAAC
111 PsiBlast_CBE 61.6937% -64 - C3 -3DI1 3.1 DAPA_STAAC
113 PsiBlast_CBE 61.6537% -71 - C3 -3DI0 3.0 DAPA_STAAC
98 PsiBlast_CBE 61.4943% -21 - C3 -5F1V 3.4 DAPA_CAMJE
100 PsiBlast_CBE 61.3439% 1 - C3 -3SI9 Error DAPA_BARHE
104 PsiBlast_CBE 60.5639% -62 - C3 -3VFL 1.7 ?
87 PsiBlast_CBE 60.0743% -19 - C3 -5F1U 3.4 DAPA_CAMJE
86 PsiBlast_CBE 60.0643% -17 - C3 -5F1U 3.2 DAPA_CAMJE
97 PsiBlast_CBE 59.6543% -19 - C3 -5F1V 3.6 DAPA_CAMJE
85 PsiBlast_CBE 59.6343% -19 - C3 -5F1U 4.6 DAPA_CAMJE
88 PsiBlast_CBE 59.5943% -19 - C3 -5F1U 3.2 DAPA_CAMJE
96 PsiBlast_CBE 59.5143% -22 - C3 -5F1V 3.5 DAPA_CAMJE
95 PsiBlast_CBE 58.9543% -19 - C3 -5F1V 3.7 DAPA_CAMJE