@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VQ85: (2017-11-25 )
MEQPISVTRSNFNDWMVPVFAPANFIPVRGEGSRIWDQENKEYIDFAGGIAVNALGHAHPVAVNALTEQAKKLWHVGNGYTNEPVLRLAKQLTENTFADKVFFCNSGAEANEAALKLARKVGLDSGVAGKSGIVAFNNAFHGRTLFTVSAGGQPKYSQDFAPLPNGISHVAYNDLEAAKAVINEQTCAVIVEPVQGEGGVIPADIEFLKGLRELCDQFGALLIFDEVQTGVGRTGALYAYMNYGVVPDVLTTAKALGGGFPVGAMLTTDKFAPHFSVGTHGTTYGGNPLASAVAGAVFEFINTPEVLEGVKHRHQYFLDALNALNAEYQVFDEIRGQGLLIGCVLKAEYAGKAKDITTWAGEEGLLALIAGPNVVRFTPSLIIPEQDIDEGIARLKRALAKLAK

Atome Classification :

(49 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CIT_A_10(5VIU)
?
[Raw transfer]




P00_A_13(4JEZ)
ARGD_SALTY
[Raw transfer]




P00_A_3(4JEW)
ARGD_SALTY
[Raw transfer]




P00_A_11(4JEX)
ARGD_SALTY
[Raw transfer]




P00_B_26(4JEX)
ARGD_SALTY
[Raw transfer]




P00_B_19(4JEW)
ARGD_SALTY
[Raw transfer]




PXG_B_6(4JEV)
ARGD_SALTY
[Raw transfer]




P00_B_18(4JEZ)
ARGD_SALTY
[Raw transfer]




PLP_A_3(2PB2)
ARGD_SALTY
[Raw transfer]




PXG_A_3(4JEV)
ARGD_SALTY
[Raw transfer]




PLP_B_9(4JF1)
ARGD_SALTY
[Raw transfer]




PLP_A_3(4JF1)
ARGD_SALTY
[Raw transfer]




PLP_A_3(4JF1)
ARGD_SALTY
[Raw transfer]




PLP_A_3(2ORD)
ARGD_THEMA
[Raw transfer]




POI_C_3(1WKG)
LYSJ_THET8
[Raw transfer]




PPE_D_4(1WKH)
LYSJ_THET8
[Raw transfer]




POI_D_4(1WKG)
LYSJ_THET8
[Raw transfer]




PLP_B_13(4JEY)
ARGD_SALTY
[Raw transfer]




PLP_A_4(2E54)
ARGD_THEMA
[Raw transfer]




PPE_C_3(1WKH)
LYSJ_THET8
[Raw transfer]




PFM_A_5(2OAT)
OAT_HUMAN
[Raw transfer]




5JV_A_3(5E3K)
?
[Raw transfer]




PLP_B_4(2PB0)
ARGD_SALTY
[Raw transfer]




5JV_B_9(5E5I)
?
[Raw transfer]




PLP_A_3(2PB0)
ARGD_SALTY
[Raw transfer]




PLP_A_3(1VEF)
LYSJ_THET8
[Raw transfer]




5NJ_A_3(5E5I)
?
[Raw transfer]




PLP_B_6(2BYJ)
OAT_HUMAN
[Raw transfer]




PLP_B_4(1VEF)
LYSJ_THET8
[Raw transfer]




PLP_A_3(2EH6)
ARGD_AQUAE
[Raw transfer]




PLP_A_3(2EO5)
?
[Raw transfer]




PLP_B_4(2EH6)
ARGD_AQUAE
[Raw transfer]




PFM_A_5(2OAT)
OAT_HUMAN
[Raw transfer]




CIT_A_9(5VIU)
?
[Raw transfer]




CIT_A_9(5VIU)
?
[Raw transfer]




CIT_A_10(5VIU)
?
[Raw transfer]




EDO_A_7(4JEY)
ARGD_SALTY
[Raw transfer]




EDO_B_7(2PB0)
ARGD_SALTY
[Raw transfer]




PLP_B_6(2BYJ)
OAT_HUMAN
[Raw transfer]




PLP_A_5(2BYL)
OAT_HUMAN
[Raw transfer]




PLP_A_5(1OAT)
OAT_HUMAN
[Raw transfer]




PLP_B_6(2BYL)
OAT_HUMAN
[Raw transfer]




PLP_B_6(1OAT)
OAT_HUMAN
[Raw transfer]




PEG_B_14(5EQC)
?
[Raw transfer]




4 PsiBlast_PDB 95.1070%-104 - C1 -4ADE - ASTC_ECOLI -
25 PsiBlast_CBE 95.0870%-107 - C1 -4ADC - ASTC_ECOLI -
24 PsiBlast_CBE 95.0770%-104 - C1 -4ADC - ASTC_ECOLI -
2 PsiBlast_PDB 94.8770%-105 - C1 -4ADC - ASTC_ECOLI -
29 PsiBlast_CBE 94.6570%-103 - C1 -4ADB - ASTC_ECOLI -
26 PsiBlast_CBE 94.0670%-106 - C1 -4ADC - ASTC_ECOLI -
28 PsiBlast_CBE 94.0170%-103 - C1 -4ADB - ASTC_ECOLI -
1 PsiBlast_PDB 93.9270%-102 - C1 -4ADB - ASTC_ECOLI -
23 PsiBlast_CBE 93.5570%-103 - C1 -4ADD - ASTC_ECOLI -
22 PsiBlast_CBE 93.4870%-102 - C1 -4ADD - ASTC_ECOLI -
27 PsiBlast_CBE 93.4770%-104 - C1 -4ADB - ASTC_ECOLI -
21 PsiBlast_CBE 92.9270%-102 - C1 -4ADD - ASTC_ECOLI -
6 PsiBlast_PDB 92.8858%-105 - C1 -4JEV 5.1 ARGD_SALTY
30 PsiBlast_CBE 92.5458%-106 - C1 -4JEW 5.5 ARGD_SALTY
35 PsiBlast_CBE 92.1458%-106 - C1 -4JEY 4.2 ARGD_SALTY
3 PsiBlast_PDB 92.1070% -99 - C1 -4ADD - ASTC_ECOLI -
33 PsiBlast_CBE 91.9758%-105 - C1 -4JF1 4.1 ARGD_SALTY
5 PsiBlast_PDB 91.1258%-109 - C1 -4JEW 6.4 ARGD_SALTY
8 PsiBlast_PDB 90.7158%-109 - C1 -2PB2 4.3 ARGD_SALTY
32 PsiBlast_CBE 90.6658%-107 - C1 -2PB0 3.3 ARGD_SALTY
10 PsiBlast_PDB 89.9758%-108 - C1 -4JEZ 3.2 ARGD_SALTY
9 PsiBlast_PDB 89.9358%-108 - C1 -4JF1 4.4 ARGD_SALTY
11 PsiBlast_PDB 89.9158%-108 - C1 -4JEX 3.8 ARGD_SALTY
36 PsiBlast_CBE 89.1158%-107 - C1 -4JEX 5.3 ARGD_SALTY
34 PsiBlast_CBE 89.0758%-106 - C1 -4JEZ 2.8 ARGD_SALTY
7 PsiBlast_PDB 88.7758%-109 - C1 -2PB0 4.2 ARGD_SALTY
105 HHSearch 87.3359% -84 - C1 -4JEV 6.0 ARGD_SALTY
104 HHSearch 85.2358% -86 - C1 -4JF1 4.4 ARGD_SALTY
12 PsiBlast_PDB 80.4545%-102 - C1 -2E54 4.8 ARGD_THEMA
13 PsiBlast_PDB 79.7145%-102 - C1 -2ORD 4.8 ARGD_THEMA
14 PsiBlast_PDB 66.9443% -17 - C1 -2EH6 2.8 ARGD_AQUAE
37 PsiBlast_CBE 66.7343% -20 - C1 -2EH6 3.2 ARGD_AQUAE
59 PsiBlast_CBE 58.9835% -29 - C1 -1OAT 3.4 OAT_HUMAN
60 PsiBlast_CBE 58.8135% -30 - C1 -1OAT 3.6 OAT_HUMAN
18 PsiBlast_PDB 58.1640% 11 - C1 -1WKH 6.0 LYSJ_THET8
48 PsiBlast_CBE 58.0436% -31 - C1 -2BYJ 3.8 OAT_HUMAN
39 PsiBlast_CBE 57.8640% 9 - C1 -1WKG 5.6 LYSJ_THET8
56 PsiBlast_CBE 57.6535% -30 - C1 -2OAT 2.8 OAT_HUMAN
40 PsiBlast_CBE 57.4040% 12 - C1 -1VEF 2.7 LYSJ_THET8
16 PsiBlast_PDB 57.3440% 13 - C1 -1VEF 2.6 LYSJ_THET8
47 PsiBlast_CBE 57.3336% -31 - C1 -2BYJ 3.1 OAT_HUMAN
38 PsiBlast_CBE 57.1440% 11 - C1 -1WKH 6.6 LYSJ_THET8
63 PsiBlast_CBE 56.0835% -3 - C1 -2BYL 3.5 OAT_HUMAN
17 PsiBlast_PDB 56.0140% 10 - C1 -1WKG 5.7 LYSJ_THET8
112 HHSearch 55.9134% -14 - C1 -5VIU 2.8 ?
45 PsiBlast_CBE 55.7935% -10 - C1 -5VIU 2.8 ?
62 PsiBlast_CBE 54.5235% -2 - C1 -2BYL 3.6 OAT_HUMAN
111 HHSearch 53.0534% -15 - C1 -5VIU Error ?
92 PsiBlast_CBE 42.3734% 13 - C1 -2EO5 2.7 ?