@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VQN1: (2017-11-28 )
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFTDGMVNILIGGKEIDDELLEEVEGQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDPNKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDASESARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLDGTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK

Atome Classification :

(59 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_6(2J7P)
FTSY_THEAQ
[Raw transfer]




GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]




GCP_B_7(5L3R)
CFTSY_ARATH
[Raw transfer]




GCP_B_7(5L3R)
CFTSY_ARATH
[Raw transfer]




GCP_D_13(5L3R)
CFTSY_ARATH
[Raw transfer]




GCP_B_6(1RJ9)
SRP54_THEAQ
[Raw transfer]




GCP_D_17(1OKK)
FTSY_THEAQ
[Raw transfer]




GDP_B_11(4C7O)
FTSY_ECOLI
[Raw transfer]




GNP_B_14(5L3Q)
SRPRA_HUMAN
[Raw transfer]




GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]




GNP_A_12(2J7P)
SRP54_THEAQ
[Raw transfer]




GDP_B_6(5L3V)
SRP54_SULSO
[Raw transfer]




GNP_B_20(2J7P)
SRP54_THEAQ
[Raw transfer]




GNP_D_25(5L3Q)
SRPRA_HUMAN
[Raw transfer]




GDP_A_6(1O87)
SRP54_THEAQ
[Raw transfer]




GDP_A_3(5L3V)
SRP54_SULSO
[Raw transfer]




GNP_B_14(5L3Q)
SRP54_HUMAN
[Raw transfer]




GNP_K_11(2Q9C)
FTSY_THEAQ
[Raw transfer]




GNP_B_5(1JPN)
SRP54_THEAQ
[Raw transfer]




GDP_A_2(5L3W)
FTSY_SULAC
[Raw transfer]




GNP_B_2(1JPJ)
SRP54_THEAQ
[Raw transfer]




GDP_A_2(5L3W)
FTSY_SULAC
[Raw transfer]




GNP_A_6(1JPN)
SRP54_THEAQ
[Raw transfer]




GNP_K_11(2Q9C)
FTSY_THEAQ
[Raw transfer]




GNP_B_20(2J7P)
FTSY_THEAQ
[Raw transfer]




GCP_A_3(1OKK)
FTSY_THEAQ
[Raw transfer]




GDP_A_8(4C7O)
FTSY_ECOLI
[Raw transfer]




GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]




GOL_B_14(3DMD)
?
[Raw transfer]




GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]




GNP_A_12(2J7P)
FTSY_THEAQ
[Raw transfer]




GOL_B_14(3DMD)
?
[Raw transfer]




GNP_D_25(5L3Q)
SRP54_HUMAN
[Raw transfer]




GCP_D_13(5L3R)
SR54C_ARATH
[Raw transfer]




GCP_B_7(5L3R)
SR54C_ARATH
[Raw transfer]




GOL_C_16(3DMD)
?
[Raw transfer]




GNP_T_20(2Q9B)
FTSY_THEAQ
[Raw transfer]




GCP_D_13(5L3R)
SR54C_ARATH
[Raw transfer]




CIT_B_4(1VMA)
?
[Raw transfer]




CIT_B_4(1VMA)
?
[Raw transfer]




GDP_B_2(2NG1)
SRP54_THEAQ
[Raw transfer]




GDP_C_14(4C7O)
FTSY_ECOLI
[Raw transfer]




GDP_B_11(4C7O)
SRP54_ECOLI
[Raw transfer]




GDP_D_2(2IYL)
FTSY_THEAQ
[Raw transfer]




GDP_B_12(1O87)
SRP54_THEAQ
[Raw transfer]




FMT_A_5(1O87)
SRP54_THEAQ
[Raw transfer]




GDP_A_7(1NG1)
SRP54_THEAQ
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




GCP_D_17(1OKK)
SRP54_THEAQ
[Raw transfer]




FMT_B_11(1O87)
SRP54_THEAQ
[Raw transfer]




AMP_C_22(5L3Q)
SRPRA_HUMAN
[Raw transfer]




GDP_D_18(4C7O)
FTSY_ECOLI
[Raw transfer]




GDP_D_18(4C7O)
SRP54_ECOLI
[Raw transfer]




GDP_D_18(4C7O)
SRP54_ECOLI
[Raw transfer]




AMP_A_9(5L3Q)
SRPRA_HUMAN
[Raw transfer]




ACY_B_7(1JPN)
SRP54_THEAQ
[Raw transfer]




ACY_A_9(1JPN)
SRP54_THEAQ
[Raw transfer]




EDO_Q_17(2Q9B)
FTSY_THEAQ
[Raw transfer]




116 HHSearch 83.4961%-126 - C6 -2YHS - FTSY_ECOLI -
2 PsiBlast_PDB 82.9862%-124 - C6 -2QY9 - FTSY_ECOLI -
5 PsiBlast_PDB 82.2163%-136 - C6 -3ZN8 - FTSY_ECOLI -
4 PsiBlast_PDB 81.7963%-134 - C6 -1FTS - FTSY_ECOLI -
127 HHSearch 80.7664%-141 - C6 -3ZN8 - FTSY_ECOLI -
3 PsiBlast_PDB 80.1162%-126 - C6 -2XXA - FTSY_ECOLI -
22 PsiBlast_CBE 80.1064%-120 - C6 -4C7O 3.2 FTSY_ECOLI
21 PsiBlast_CBE 79.3762%-127 - C6 -2XXA - FTSY_ECOLI -
7 PsiBlast_PDB 79.2451%-120 - C6 -1VMA - ? -
23 PsiBlast_CBE 79.0351%-123 - C6 -1VMA 3.8 ?
123 HHSearch 78.5951%-121 - C6 -1VMA 3.8 ?
6 PsiBlast_PDB 78.4964%-122 - C6 -4C7O 7.0 FTSY_ECOLI
1 PsiBlast_PDB 73.8159% -3 - C6 -2YHS - FTSY_ECOLI -
139 Fugue 69.8629% -91 - C6 -2J37 - SRP54_CANLF -
118 HHSearch 65.6744% -41 - C6 -5L3R 8.4 CFTSY_ARATH
135 HHSearch 65.3951% 7 - C6 -2Q9C 6.2 FTSY_THEAQ
134 HHSearch 65.2935%-119 - C6 -5L3R 2.9 SR54C_ARATH
24 PsiBlast_CBE 64.5745% -17 - C6 -5L3R 8.8 CFTSY_ARATH
11 PsiBlast_PDB 64.4645% -17 - C6 -5L3R 8.4 CFTSY_ARATH
119 HHSearch 63.3242% -9 - C6 -3B9Q - CFTSY_ARATH -
136 HHSearch 63.0452% 6 - C6 -1RJ9 2.5 FTSY_THEAQ
15 PsiBlast_PDB 62.8048% 13 - C6 -2Q9C 6.2 FTSY_THEAQ
14 PsiBlast_PDB 60.8848% 16 - C6 -2Q9B 5.9 FTSY_THEAQ
26 PsiBlast_CBE 60.0648% 17 - C6 -2Q9B 2.8 FTSY_THEAQ
83 PsiBlast_CBE 59.6831% -27 - C6 -5L3Q 8.5 SRPRA_HUMAN
82 PsiBlast_CBE 59.6031% -29 - C6 -5L3Q 8.7 SRPRA_HUMAN
12 PsiBlast_PDB 58.9048% 14 - C6 -1RJ9 2.5 FTSY_THEAQ
20 PsiBlast_PDB 56.5450% 44 - C6 -2IYL 7.2 FTSY_THEAQ
16 PsiBlast_PDB 55.8048% 41 - C6 -1OKK 9.1 FTSY_THEAQ
43 PsiBlast_CBE 55.7836% -19 - C6 -5L3R 2.9 SR54C_ARATH
42 PsiBlast_CBE 55.6736% -20 - C6 -5L3R 2.9 SR54C_ARATH
28 PsiBlast_CBE 55.3350% 56 - C6 -2J7P 2.7 FTSY_THEAQ
18 PsiBlast_PDB 55.0850% 53 - C6 -2J7P 2.7 FTSY_THEAQ
34 PsiBlast_CBE 54.6335% 36 - C6 -5L3W 6.9 FTSY_SULAC
40 PsiBlast_CBE 53.9336% 15 - C6 -3DM5 Error SRP54_PYRFU
122 HHSearch 53.8535% 29 - C6 -4C7O 4.0 SRP54_ECOLI
128 HHSearch 53.2437% 20 - C6 -5L3W 6.9 FTSY_SULAC
60 PsiBlast_CBE 52.8832% 55 - C6 -5L3V 8.5 SRP54_SULSO
39 PsiBlast_CBE 52.7936% 20 - C6 -3DM5 6.8 SRP54_PYRFU
61 PsiBlast_CBE 52.7032% 56 - C6 -5L3V 7.4 SRP54_SULSO
46 PsiBlast_CBE 52.2634% 53 - C6 -4C7O 4.0 SRP54_ECOLI
84 PsiBlast_CBE 51.8933% 50 * C6 *5L3Q 2.4 SRP54_HUMAN
32 PsiBlast_CBE 51.4639% 23 - C6 -3DMD 2.2 ?
121 HHSearch 51.3139% 26 - C6 -3E70 7.1 ?
33 PsiBlast_CBE 51.3039% 25 - C6 -3DMD 3.4 ?
85 PsiBlast_CBE 51.0833% 56 - C6 -5L3Q 3.1 SRP54_HUMAN
120 HHSearch 49.8839% 23 - C6 -3DMD 3.4 ?
47 PsiBlast_CBE 49.8834% 59 - C6 -4C7O 3.2 SRP54_ECOLI
54 PsiBlast_CBE 45.8836% 50 - C6 -1RJ9 9.5 SRP54_THEAQ
69 PsiBlast_CBE 45.7735% 44 - C6 -1OKK 3.1 SRP54_THEAQ
73 PsiBlast_CBE 45.4435% 47 - C6 -1JPJ 7.6 SRP54_THEAQ
51 PsiBlast_CBE 45.4136% 50 - C6 -2NG1 6.3 SRP54_THEAQ
65 PsiBlast_CBE 45.2335% 45 - C6 -2J7P 9.3 SRP54_THEAQ
72 PsiBlast_CBE 45.0835% 50 - C6 -1JPN 7.4 SRP54_THEAQ
64 PsiBlast_CBE 44.8535% 49 - C6 -2J7P 9.4 SRP54_THEAQ
70 PsiBlast_CBE 44.7235% 55 - C6 -1NG1 7.5 SRP54_THEAQ
71 PsiBlast_CBE 44.5635% 50 - C6 -1JPN 6.5 SRP54_THEAQ
80 PsiBlast_CBE 44.1735% 60 - C6 -1O87 6.9 SRP54_THEAQ
81 PsiBlast_CBE 42.8835% 56 - C6 -1O87 7.1 SRP54_THEAQ