@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VQX5: (2017-11-29 )
MKQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVNGEIFIGQGQALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALTQVAQKAGVVVADIEKLTVWGNHSPTMYADYRFATANGESLKDKINDPAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGTNGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERAAIADMVK

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_F_6(1Y7T)
MDH_THETH
[Raw transfer]



NAD_D_4(1B8U)
MDH_AQUAR
[Raw transfer]



NAI_A_3(5KVV)
MDH_MYCTU
[Raw transfer]



NDP_C_3(1Y7T)
MDH_THETH
[Raw transfer]



NAD_A_3(4I1I)
?
[Raw transfer]



NAD_C_3(1B8V)
MDH_AQUAR
[Raw transfer]



NAI_B_6(5KVV)
MDH_MYCTU
[Raw transfer]



NAD_A_7(4MDH)
MDHC_PIG
[Raw transfer]



NDP_C_3(1WZI)
MDH_THETH
[Raw transfer]



NAD_B_5(5MDH)
MDHC_PIG
[Raw transfer]



NAP_C_3(2CVQ)
MDH_THETH
[Raw transfer]



NAD_A_3(5MDH)
MDHC_PIG
[Raw transfer]



NAP_D_4(2CVQ)
MDH_THETH
[Raw transfer]



NAD_B_8(4MDH)
MDHC_PIG
[Raw transfer]



NDP_D_4(1WZI)
MDH_THETH
[Raw transfer]



NAP_C_3(1CIV)
MDHP_FLABI
[Raw transfer]



NAP_C_3(1CIV)
MDHP_FLABI
[Raw transfer]



NAD_D_4(1WZE)
MDH_THETH
[Raw transfer]



NAD_C_3(1WZE)
MDH_THETH
[Raw transfer]



MAK_A_4(5MDH)
MDHC_PIG
[Raw transfer]



MAK_B_6(5MDH)
MDHC_PIG
[Raw transfer]



EDO_A_7(4I1I)
?
[Raw transfer]
1 PsiBlast_PDB 99.1277%-115 - C3 -1B8P - MDH_AQUAR -
56 HHSearch 99.0577%-114 - C3 -1B8P - MDH_AQUAR -
2 PsiBlast_PDB 98.6677%-112 - C3 -1B8U 9.2 MDH_AQUAR
3 PsiBlast_PDB 98.5777%-112 - C3 -1B8V 8.7 MDH_AQUAR
8 PsiBlast_PDB 88.3367% -85 - C3 -1Y7T 9.4 MDH_THETH
12 PsiBlast_PDB 87.8967% -87 - C3 -1WZE 5.6 MDH_THETH
9 PsiBlast_PDB 87.7167% -84 - C3 -2CVQ 7.0 MDH_THETH
26 PsiBlast_CBE 87.5767% -85 - C3 -1Y7T 9.4 MDH_THETH
7 PsiBlast_PDB 87.5567% -81 - C3 -1IZ9 - MDH_THETH -
25 PsiBlast_CBE 87.4267% -86 - C3 -2CVQ 6.6 MDH_THETH
10 PsiBlast_PDB 87.3967% -86 - C- -1BMD - MDH_THETH -
28 PsiBlast_CBE 87.2566% -84 - C- -1BDM - MDH_THETH -
13 PsiBlast_PDB 87.0867% -83 - C3 -1WZI 6.3 MDH_THETH
29 PsiBlast_CBE 86.8367% -83 - C3 -1WZI 6.5 MDH_THETH
30 PsiBlast_CBE 86.6767% -85 - C3 -1WZE 6.2 MDH_THETH
27 PsiBlast_CBE 85.8167% -85 - C- -1BMD - MDH_THETH -
11 PsiBlast_PDB 84.2366% -84 - C- -1BDM - MDH_THETH -
31 PsiBlast_CBE 84.1260% -71 - C3 -5KVV 11.1 MDH_MYCTU
6 PsiBlast_PDB 83.8967% -92 - C3 -4KDF - MDH_THETH -
14 PsiBlast_PDB 83.3860% -74 - C3 -5KVV 11.0 MDH_MYCTU
19 PsiBlast_PDB 81.0145% -78 - C3 -1CIV 7.0 MDHP_FLABI
72 HHSearch 77.9045% -56 - C3 -1CIV 7.0 MDHP_FLABI
17 PsiBlast_PDB 76.7251% -65 - C3 -4MDH 10.1 MDHC_PIG
41 PsiBlast_CBE 75.8850% -70 - C3 -4I1I 10.6 ?
34 PsiBlast_CBE 75.1751% -61 - C3 -4MDH 8.8 MDHC_PIG
33 PsiBlast_CBE 75.0551% -54 - C3 -5MDH 8.8 MDHC_PIG
16 PsiBlast_PDB 74.6751% -53 - C3 -5MDH 8.4 MDHC_PIG