@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VRC7: (2017-12-02 )
MMRTHYCGSLTEAQIDQTVTLCGWVHRRRDHGGVIFLDMRDRDGLVQVVIDPDTPEAFATADKARSEYVLKITGRVRRRYEGTENPNMVSGQIEVLGKEIEVLAASETPPFPLNDDTINVSEEHRLKYRFLDIRRPEMLDRLRFRSKVTNLIRNYLDDHGFLDVETPILTRATPEGARDYLVPSRVQNGSFYALPQSPQLFKQLLMVGGIDRYYQIAKCFRDEDLRADRQPEFTQIDIETSFLNDDDIMDLMEGMTVKLFNDLLGVKFEKFRRMPYSEAMRDYASDKPDLRIPLKLVDVADLMQEVEFKVFAGPAKDPKGRIAALRVPGAGSLTRSQIDEYTKFVGIYGAKGLAYIKVNEIEKGIEGLQSPIVKFIEPIVMQLLERVGAENGDIVFFGADKAKIVNDAMGALRVKIGHDLNLATCEWAPLWVVDFPMFEEADDGKWTSVHHPFTLPKSSVEDVKSNPGEALSVAYDMVLNGTEVGGGSLRIYTLEMQKAIFEALGISDEEAEEKFSFLLNALRYGAPPHGGLAFGLDRLVMLMTGATSIRDVIAFPKTKTAECPLTQAPAPVEANQLRDLGIRLREQQKKEA

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]



AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]



AMO_F_6(1G51)
SYD_THETH
[Raw transfer]



AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]



AMO_E_5(1G51)
SYD_THETH
[Raw transfer]



ASP_A_3(5W25)
?
[Raw transfer]



ASP_A_3(4O2D)
SYDND_MYCS2
[Raw transfer]



ASP_B_6(4O2D)
SYDND_MYCS2
[Raw transfer]



ASP_B_7(5W25)
?
[Raw transfer]



ASP_A_3(4WJ4)
SYDND_PSEAE
[Raw transfer]



ASP_A_3(4WJ4)
SYDND_PSEAE
[Raw transfer]



GOL_B_15(1E1O)
SYK2_ECOLI
[Raw transfer]



ATP_B_4(3NEM)
SYD_THEKO
[Raw transfer]



ASP_A_3(3NEL)
SYD_THEKO
[Raw transfer]



3SY_A_2(4RMF)
SYDND_MYCS2
[Raw transfer]



3SY_A_2(4RMF)
SYDND_MYCS2
[Raw transfer]
2 PsiBlast_PDB 85.5271% -66 - C7 -4WJ4 2.8 SYDND_PSEAE
5 PsiBlast_PDB 84.4659% -62 - C7 -1C0A 8.6 SYD_ECOLI
59 Fugue 84.3759% -62 - C7 -1C0A 8.6 SYD_ECOLI
4 PsiBlast_PDB 84.1059% -65 - C7 -1IL2 - SYD_ECOLI -
1 PsiBlast_PDB 83.9171% - - C7 -4WJ3 - SYDND_PSEAE -
40 HHSearch 83.9071% - - C7 -4WJ3 - SYDND_PSEAE -
3 PsiBlast_PDB 83.5259% -63 - C7 -1EQR - SYD_ECOLI -
21 PsiBlast_CBE 83.0859% -63 - C7 -1IL2 - SYD_ECOLI -
41 HHSearch 78.6959% -4 - C7 -1C0A 8.6 SYD_ECOLI
39 HHSearch 78.6871% -3 - C7 -4WJ4 2.8 SYDND_PSEAE
7 PsiBlast_PDB 73.4748% -20 - C7 -4O2D 3.6 SYDND_MYCS2
6 PsiBlast_PDB 72.5348% -19 - C7 -4RMF 3.3 SYDND_MYCS2
37 HHSearch 71.4450% -15 - C7 -4RMF 3.3 SYDND_MYCS2
25 PsiBlast_CBE 70.2749% 17 - C7 -1G51 7.8 SYD_THETH
10 PsiBlast_PDB 69.4249% 15 - C7 -1L0W - SYD_THETH -
42 HHSearch 69.0451% 18 - C7 -1L0W - -
9 PsiBlast_PDB 68.9949% 18 - C7 -1G51 7.7 SYD_THETH
43 HHSearch 68.3251% 21 * C7 *1EFW - SYD_THETH -
11 PsiBlast_PDB 68.2246% 17 - C7 -5W25 3.5 ?
8 PsiBlast_PDB 67.7349% 21 - C7 -1EFW - SYD_THETH -
24 PsiBlast_CBE 66.8748% -36 - C7 -4O2D 3.8 SYDND_MYCS2
26 PsiBlast_CBE 65.7146% 18 - C7 -5W25 4.0 ?
13 PsiBlast_PDB 32.7935% 10 - C7 -3NEL 3.5 SYD_THEKO