@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VRD6: (2017-12-02 )
MPIYNAPLADMKFILNDVFKAEQFWQANEKLAHVDAATAEAILEEMAKFAQNVTHPLNRTGDEEGARYENGEVFTPAGFKDAFRQYAEGGWIGLGADEEWGGQGMPKMLTVLADEMLFATNPSFMLYPLLSVGAGMALSSYASQEQKETYLPKIYSGEWSGTMCLTEPHAGTDLGIIKTKAERNEDGTYNITGTKIFITGGDNDLAENIIHLVLAKTPDAPAGSRGISLFIVPKYLVNEDGSLGDRNHVGPGSIEHKMGIKASATCVMNFDGAKGYLVGKENEGLAAMFVMMNYERLSMGIQGLGASEFAYQNAAQYATARLQGRSAAGVQSPSKPADSILVHGDVRRMLLNVRANNEASRAFAVYVGQQLDITKFSTDAEAVKKANDRVALLTPIAKAYLTDTAFQATLDAQMVFGGHGYIREWGMEQCIRDLRIAQIYEGTNGVQSQDLIGRKTIKCGGAFIAEYITEIRDFANDLDTDLNFIKDATLDAATEIEAITQFIIEQAAENVEFPNSAAVDYLHAVGLLSFSYMFAKIAAAAKDKSGDFYQNKLALAQYFVERILPDIDARIAKIKAGSDLIMGFSEDYFTNQA

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_8(4L1F)
?
[Raw transfer]



FAD_A_9(1BUC)
ACDS_MEGEL
[Raw transfer]



FDA_A_3(4N5F)
?
[Raw transfer]



FAD_A_3(4L1F)
?
[Raw transfer]



FAD_C_3(2DVL)
?
[Raw transfer]



FAD_B_11(1BUC)
ACDS_MEGEL
[Raw transfer]



CAA_B_7(1BUC)
ACDS_MEGEL
[Raw transfer]



CAA_A_5(1BUC)
ACDS_MEGEL
[Raw transfer]
31 Fugue 79.6220% 15 - C3 -4Y9J - ACD11_CAEEL -
45 HHSearch 76.7822% -8 - C3 -3OWA - ? -
41 HHSearch 76.6021% -22 - C3 -3DJL - AIDB_ECOLI -
40 HHSearch 76.4923% -15 - C3 -2UXW - ACADV_HUMAN -
27 Fugue 76.2821% -28 - C3 -2Z1Q - ? -
39 HHSearch 75.5223% -10 - C3 -3B96 - ACADV_HUMAN -
29 Fugue 75.5019% -19 - C3 -2UXW - ACADV_HUMAN -
49 HHSearch 75.3424% -56 - C3 -1RX0 - ACAD8_HUMAN -
48 HHSearch 75.1324% -56 * C3 *1RX0 - ACAD8_HUMAN -
42 HHSearch 75.0521% -23 - C3 -3U33 - AIDB_ECOLI -
10 PsiBlast_PDB 74.5627% -28 - C3 -2DVL 7.3 ?
14 PsiBlast_PDB 74.4428% -19 - C3 -1IVH - IVD_HUMAN -
30 Fugue 74.3921% 10 - C3 -3DJL - AIDB_ECOLI -
44 HHSearch 73.7522% -3 - C3 -3OWA - ? -
43 HHSearch 73.2922% -18 - C3 -2Z1Q - ? -
12 PsiBlast_PDB 72.9328% 0 - C- -3B96 - ACADV_HUMAN -
46 HHSearch 70.4919% -19 - C3 -5EZ3 - ? -
8 PsiBlast_PDB 69.7829% 0 - C- -2Z1Q - ? -
56 HHSearch 69.2726% -14 - C3 -3R7K - ? -
28 Fugue 68.2626% -6 - C3 -1BUC - ACDS_MEGEL -
4 PsiBlast_PDB 66.6030% -22 - C3 -4N5F 8.9 ?
25 PsiBlast_CBE 58.9631% 2 - C3 -4L1F 8.9 ?
3 PsiBlast_PDB 56.9031% 3 - C3 -4L1F 9.0 ?
24 PsiBlast_CBE 52.8433% -16 - C3 -1BUC 9.1 ACDS_MEGEL
2 PsiBlast_PDB 50.8533% -17 - C3 -1BUC 8.7 ACDS_MEGEL