@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VRL4: (2017-12-03 )
MYQVLARKYRPRNFNELVGQNHVSRALSSALESGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKILQLSKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFRPLAPNEILVSEPVQQNGQAEVGLNSQAQTAQEITPVSAVQPVEVISQPAMVEPEPEPEPEPEPQPNQDLMVFDPNHHELIGLESAVVQETVSVLEEDFIPVPEQKLVQVQAETQVKQIEPEPASTAEPIGLFEASNAEFSLAQDTSAYDLVSEPVIEKQSLVQAEIVETVAVVKEPNATDNSQLMPQDILKLPSQTLEGEWTLEKWEFWFRNSQLSPAVQELAQHGVMTGEIGGNTVFHIPQEYENMLTQLQQALIEALKQQWPNTQFTVEYGAVNTATPYVMQSVRKEKAFHRATELLQQQPVIKSLIETFDGELQNIQLKP

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGS_B_8(1NJF)
DPO3X_ECOLI
[Raw transfer]




ADP_C_10(1NJF)
DPO3X_ECOLI
[Raw transfer]




AGS_D_12(1NJF)
DPO3X_ECOLI
[Raw transfer]




AGS_A_6(1NJF)
DPO3X_ECOLI
[Raw transfer]




NACID_K_11(3GLF)
DPO3X_ECOLI
[Raw transfer]

-

NACID_M_13(3GLF)
DPO3X_ECOLI
[Raw transfer]

-

NACID_M_13(3GLG)
DPO3X_ECOLI
[Raw transfer]

-

NACID_K_11(3GLG)
DPO3X_ECOLI
[Raw transfer]

-

NACID_M_13(3GLI)
DPO3X_ECOLI
[Raw transfer]

-

NACID_K_11(3GLI)
DPO3X_ECOLI
[Raw transfer]

-

NACID_K_11(3GLG)
DPO3X_ECOLI
[Raw transfer]

-

NACID_K_11(3GLF)
DPO3X_ECOLI
[Raw transfer]

-

NACID_M_13(3GLG)
DPO3X_ECOLI
[Raw transfer]

-

NACID_M_13(3GLI)
DPO3X_ECOLI
[Raw transfer]

-

NACID_K_11(3GLI)
DPO3X_ECOLI
[Raw transfer]

-

NACID_M_13(3GLF)
DPO3X_ECOLI
[Raw transfer]

-

NACID_K_11(3GLF)
DPO3X_ECOLI
[Raw transfer]

-

NACID_M_13(3GLG)
DPO3X_ECOLI
[Raw transfer]

-

NACID_M_13(3GLI)
DPO3X_ECOLI
[Raw transfer]

-

NACID_K_11(3GLI)
DPO3X_ECOLI
[Raw transfer]

-

NACID_K_11(3GLG)
DPO3X_ECOLI
[Raw transfer]

-

NACID_M_13(3GLF)
DPO3X_ECOLI
[Raw transfer]

-

40 PsiBlast_CBE 90.9256%-139 - C2 -3GLF 2.7 DPO3X_ECOLI
43 PsiBlast_CBE 90.7055%-137 - C2 -3GLG 3.0 DPO3X_ECOLI
42 PsiBlast_CBE 90.5856%-130 - C2 -3GLF 3.0 DPO3X_ECOLI
4 PsiBlast_PDB 90.5456%-147 - C2 -1XXI - DPO3X_ECOLI -
33 PsiBlast_CBE 90.5156%-138 - C2 -3GLI 2.7 DPO3X_ECOLI
47 PsiBlast_CBE 90.4155%-129 - C2 -3GLG 2.8 DPO3X_ECOLI
35 PsiBlast_CBE 90.2456%-139 - C2 -3GLI 4.7 DPO3X_ECOLI
46 PsiBlast_CBE 90.1355%-136 - C2 -3GLG 3.1 DPO3X_ECOLI
44 PsiBlast_CBE 90.0855%-131 - C2 -3GLG 3.1 DPO3X_ECOLI
38 PsiBlast_CBE 89.9456%-134 - C2 -3GLF 3.4 DPO3X_ECOLI
36 PsiBlast_CBE 89.8856%-138 - C2 -3GLI 2.9 DPO3X_ECOLI
39 PsiBlast_CBE 89.8456%-132 - C2 -3GLF 3.2 DPO3X_ECOLI
34 PsiBlast_CBE 89.5856%-128 - C2 -3GLI 4.6 DPO3X_ECOLI
31 PsiBlast_CBE 89.4756%-141 - C2 -1XXI - DPO3X_ECOLI -
7 PsiBlast_PDB 89.4455%-138 - C2 -3GLG 3.2 DPO3X_ECOLI
3 PsiBlast_PDB 89.3556%-144 - C2 -3GLH - DPO3X_ECOLI -
41 PsiBlast_CBE 89.3456%-135 - C2 -3GLF 3.2 DPO3X_ECOLI
5 PsiBlast_PDB 89.3256%-137 - C2 -3GLF 2.8 DPO3X_ECOLI
37 PsiBlast_CBE 89.3156%-130 - C2 -3GLI 2.2 DPO3X_ECOLI
45 PsiBlast_CBE 89.2255%-135 - C2 -3GLG 3.0 DPO3X_ECOLI
6 PsiBlast_PDB 89.1956%-141 - C2 -3GLI 2.4 DPO3X_ECOLI
9 PsiBlast_PDB 77.2870%-129 - C2 -1NJF Error DPO3X_ECOLI
50 PsiBlast_CBE 76.5370%-130 - C2 -1NJF Error DPO3X_ECOLI
51 PsiBlast_CBE 74.3870%-123 - C2 -1NJF Error DPO3X_ECOLI
49 PsiBlast_CBE 74.3070%-119 - C2 -1NJF Error DPO3X_ECOLI