@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VRV3: (2017-12-04 )
MPELPEVETTKTSLFPLLNQKVLSVEVRNPSLRWPIPDNVQKLVGQRLIGLNRRSKYILAEFEQDQMLWHLGMSGSFRLCQPNDELRKHDHLIIQFEDQQLRYHDPRRFGCILWLNPETQGKLIDTLGPEPLSTDFHAEYLASKLKNKSVGIKIALMDNHVVVGVGNIYATESLFNVGIHPAQPAGDLTMQQIEKLVVEIKRILKSAIDLGGSTLRDYSNAMGENGYFQQTLLAYGRAREMCVNCETTLENLKLGQRASVFCPQCQPLKKLRKP

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_H_7(1K82)
FPG_ECOLI
[Raw transfer]
-
GOL_D_8(3SAR)
?
[Raw transfer]



GOL_A_3(3TWK)
FPG_ARATH
[Raw transfer]



NACID_E_1(1K82)
FPG_ECOLI
[Raw transfer]
-
NACID_E_1(1K82)
FPG_ECOLI
[Raw transfer]
-
NACID_F_3(1K82)
FPG_ECOLI
[Raw transfer]
-
NACID_G_5(1K82)
FPG_ECOLI
[Raw transfer]
-
NACID_F_3(1K82)
FPG_ECOLI
[Raw transfer]
-
TRS_B_2(1TDH)
NEIL1_HUMAN
[Raw transfer]
104 Fugue 72.4946% 3 * C8 *1K82 7.4 FPG_ECOLI
1 PsiBlast_PDB 71.9444% 6 - C8 -1K82 7.4 FPG_ECOLI
22 PsiBlast_CBE 71.3744% 4 - C8 -1K82 7.4 FPG_ECOLI
21 PsiBlast_CBE 71.2144% 3 - C8 -1K82 7.0 FPG_ECOLI
13 PsiBlast_PDB 70.9636% 12 - C8 -2F5S - ? -
23 PsiBlast_CBE 70.7644% 3 - C8 -1K82 7.3 FPG_ECOLI
20 PsiBlast_PDB 70.2036% 10 - C8 -3GQ4 - ? -
19 PsiBlast_PDB 70.1836% 10 - C8 -3GPY - ? -
105 Fugue 69.8038% -6 - C8 -1EE8 - FPG_THET8 -
12 PsiBlast_PDB 69.5236% 13 - C8 -2F5Q - ? -
40 PsiBlast_CBE 69.2136% 14 - C8 -3JR5 - ? -
10 PsiBlast_PDB 68.9436% 17 - C8 -1R2Y - ? -
38 PsiBlast_CBE 68.6436% -0 - C8 -3U6D - ? -
66 HHSearch 68.6344% 4 - C8 -1K82 7.3 FPG_ECOLI
6 PsiBlast_PDB 68.4237% 15 - C8 -1L2D - ? -
65 HHSearch 68.3437% 19 - C8 -1R2Y - ? -
11 PsiBlast_PDB 67.9936% 16 - C8 -1R2Z - ? -
18 PsiBlast_PDB 67.9737% 2 - C8 -3GQ5 - ? -
25 PsiBlast_CBE 67.6237% 3 - C8 -3GP1 - ? -
33 PsiBlast_CBE 67.6036% 4 - C8 -3U6P - ? -