@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VRW9: (2017-12-05 )
MRTSRFLFATLRETPNDAEVISHQLMLRAGMIRKLASGLYTWLPMGTRVLKKVDAIVREEMNRSGAMEVFMPVTQPASLWEESGRYEQYGPGLLRFKDRHDNPFVLGPTHEEVITDLARNELKSYKQLPVNFYQIQTKFRDEIRPRFGVMRSREFIMKDAYSFHATQESLQETYNVMYDTYSRIFTRLGLDFRPVQADTGSIGGSASHEFHVLAASGEDDIAFSTESDYAANVEMAEAVLVGERAAPTQEFKLVETPNQKTIADVCQFLNADPKQSVKALLVQGVADEKGNVPVVALFLRGDHELNEIKAEKHPLVAAPLAFATEEQLQAFGLTAGFTGPQGLVEKGITVIVDRAASVLSDFVAGANEADKHAVGVNWERDAQITEVFDLRNVVEGDPSPDGKGTLQIKCGIEVGHIFQLGTKYSEALGCKVLGEDGKPFTVTMGCYGIGVTRVVAAAIEQNYDDKGIIWPQAIAPFEIAIVPMNAHKSPRTLEAAEALYAELQAQGFDVLLDDRNERPGVKFSDLELMGIPHRIVIGEKGLDAGTFEYKGRRDAEASNLTKEELLAKLAR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(2J3M)
SYP_ENTFA
[Raw transfer]



P5A_A_24(2J3L)
SYP_ENTFA
[Raw transfer]



ATP_A_3(2J3M)
SYP_ENTFA
[Raw transfer]



P5A_A_24(2J3L)
SYP_ENTFA
[Raw transfer]



P5A_B_25(2J3L)
SYP_ENTFA
[Raw transfer]



P5A_B_25(2J3L)
SYP_ENTFA
[Raw transfer]



ATP_B_7(2J3M)
SYP_ENTFA
[Raw transfer]



A5A_A_4(1NJ6)
SYP_METTH
[Raw transfer]



5CA_A_4(1NJ1)
SYP_METTH
[Raw transfer]
1 PsiBlast_PDB 85.6165% -32 - C1 -5UCM - SYP_PSEAE -
61 HHSearch 85.5467% -31 - C1 -5UCM - SYP_PSEAE -
51 Fugue 77.3347% -21 - C1 -2J3L 9.2 SYP_ENTFA
23 PsiBlast_CBE 76.6048% -20 - C1 -2J3L 9.3 SYP_ENTFA
22 PsiBlast_CBE 76.5548% -18 - C1 -2J3M 8.8 SYP_ENTFA
2 PsiBlast_PDB 76.3948% -19 - C1 -2J3L 9.2 SYP_ENTFA
63 HHSearch 76.2348% -22 - C1 -2J3L 9.3 SYP_ENTFA
3 PsiBlast_PDB 75.5548% -18 - C1 -2J3M 8.0 SYP_ENTFA
62 HHSearch 75.2848% -20 - C1 -2J3M 8.0 SYP_ENTFA
65 HHSearch 73.9946% -95 - C1 -2I4L - SYP_RHOPA -
64 HHSearch 72.7046% -95 - C1 -2I4N - SYP_RHOPA -
53 Fugue 53.8826% -8 - C1 -1HC7 - SYP_THET8 -
52 Fugue 51.2326% 29 * C1 *1NJ8 - SYP_METJA -
67 HHSearch 51.1725% -7 - C1 -1NJ1 - SYP_METTH -
28 PsiBlast_CBE 51.0957% -81 - C2 -2I4M - SYP_RHOPA -
68 HHSearch 51.0625% -7 - C1 -1NJ5 - SYP_METTH -
24 PsiBlast_CBE 50.7057% -86 - C2 -2I4O - SYP_RHOPA -
7 PsiBlast_PDB 50.3757% -87 - C2 -2I4O - SYP_RHOPA -
5 PsiBlast_PDB 50.3257% -88 - C2 -2I4M - SYP_RHOPA -
4 PsiBlast_PDB 50.2357% -88 - C2 -2I4L - SYP_RHOPA -