@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VRZ3: (2017-12-05 )
MFKKFLFQIHWFLGISAGLILSIMGVTGAIYSYDQQILKWVNTDSYVVQAQSSPKLTPAQLYQHFTTIQPEIKINSITIAKDATASSVVNIEKEGERRGYNMMVNPYTAQVLPEVQGRKLLLLIQQIHRNLTAGEFGKQITGACALMLIYFVLSGLYLRWPKKHSARQWLAVKPKLKGRNFIWDLHAVVGTWVIVFYLLFACTGLYWSYDWWRSGMFKVLGVEQPKMQGHGGSGRNKDQLPKIQLDNAQLITALNQTWSGFNNQIGRDYSTLTVNLPKKDDGKIELSFVDATPQHERARNQAVYNYKTANIEKMELYEDKKLNQKIMSSMLPVHRGSFFGPVYQFVAMLASLAMPLFFVTGWMLYLKRRKQKKLTQAARQSLAGHYIDQNAKPWLITYATQTGVAEQLAWRTATSLQEAHQPVQVKSVQQLTEADLQQHEQILFVISTYGTGEAPDLASNFAKKLLKTNLRLQHVKYAVLALGSKEYPDTYCSFGHTVDDWLKNNGAKALFDIIEVDNANPADIQNWNQALVKATKLDLHAVNIEKVFDNWTLQQRDLLNPNSLGQPAYNIELTANHEAIWQAGDIAEIQPGNSPERINKFLQHHHILKNAVVDSLQVSIEKALWNKDLTGEIEPFANLDHLLEQLPTLPTREYSIASIPSQQVLRLVVRQQYDESDDLDLDLGLGLGLGLGLGLGSGWLTQHTEINQNVALRIRTNESFHLIDDNRPIICIGNGTGIAGLMSLLHTRTRHNYTENWLIFGERQRAHDFFYASTIEAWQTMGMLKRLDLAFSRDQEQRVYVQDIIQQNAAELINWIERGAVLYVCGSIDGMASGVDQALIHILGEEQVDELRQQGRYRRDVY

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_5(4Y7C)
NCPR_RAT
[Raw transfer]



NAP_A_5(4Y9U)
NCPR_RAT
[Raw transfer]



2AM_A_5(4YAW)
NCPR_RAT
[Raw transfer]



2AM_A_5(4YAL)
NCPR_RAT
[Raw transfer]



FAD_A_4(1DDG)
CYSJ_ECOLI
[Raw transfer]



FAD_A_2(1DDI)
CYSJ_ECOLI
[Raw transfer]



FAD_B_5(1DDG)
CYSJ_ECOLI
[Raw transfer]



FAD_B_5(5GXU)
NCPR2_ARATH
[Raw transfer]



FAD_A_4(5GXU)
NCPR2_ARATH
[Raw transfer]



FAD_F_6(1TLL)
NOS1_RAT
[Raw transfer]



FAD_B_2(1F20)

[Raw transfer]
56 HHSearch 72.4925% 16 - C2 -1JA1 - NCPR_RAT -
60 HHSearch 68.2724% 6 - C2 -2BF4 - NCPR_YEAST -
59 HHSearch 66.7124% 6 - C2 -2BPO - NCPR_YEAST -
58 HHSearch 64.1025% 17 - C2 -5GXU - NCPR2_ARATH -
79 Fugue 61.2216% -58 - C2 -1JA1 - NCPR_RAT -
62 HHSearch 60.7925% 9 - C2 -3QFS - NCPR_HUMAN -
65 HHSearch 58.3227% -19 - C2 -1F20 - -
30 PsiBlast_CBE 54.3732%-148 - C4 -3HR4 - NOS2_HUMAN -
61 HHSearch 54.0229% 28 * C2 *1DDG - CYSJ_ECOLI -
57 HHSearch 53.2225% 3 - C2 -5GXU - NCPR2_ARATH -
28 PsiBlast_CBE 50.0632%-148 * C4 *3HR4 - NOS2_HUMAN -
4 PsiBlast_PDB 50.0627% -24 - C2 -5EMN - NCPR_HUMAN -
3 PsiBlast_PDB 50.0527% -22 - C2 -3QFS - NCPR_HUMAN -
64 HHSearch 49.9123% 6 - C2 -4DQL - CPXB_BACMB -
27 PsiBlast_CBE 49.0232%-143 - C4 -3HR4 - -
77 Fugue 48.8623% 18 - C2 -1F20 - -
16 PsiBlast_PDB 48.1828% -6 - C2 -4YAW 6.5 NCPR_RAT
63 HHSearch 47.8824% 15 - C2 -4DQK - CPXB_BACMB -
29 PsiBlast_CBE 47.7132%-138 - C4 -3HR4 - NOS2_HUMAN -
13 PsiBlast_PDB 47.3328% -6 - C2 -4YAL 6.2 NCPR_RAT
1 PsiBlast_PDB 47.0338% -14 - C2 -1DDG 5.5 CYSJ_ECOLI
2 PsiBlast_PDB 46.5238% -11 - C2 -1DDI 5.5 CYSJ_ECOLI
21 PsiBlast_CBE 46.4138% -13 - C2 -1DDG 5.4 CYSJ_ECOLI
23 PsiBlast_CBE 40.2532% 4 - C2 -5GXU 4.0 NCPR2_ARATH
22 PsiBlast_CBE 40.2132% 4 - C2 -5GXU 5.5 NCPR2_ARATH
24 PsiBlast_CBE 37.4031% -4 - C2 -1F20 4.7
26 PsiBlast_CBE 34.2731% 1 - C2 -1TLL 5.2 NOS1_RAT