@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VS66: (2017-12-06 )
MQQALQQPQTLCIKHLAKNYSKRWVVKDVSFSMQSGQIVGLLGPNGAGKTTSFYMVVGLVRMDKGEIHLDDLDMSDRAMHERARKGIGYLPQEASIFRKLTIAENIMSILETRKDLNKQQRQQRLTELLNDFNISHIKDSLGMSVSGGERRRAEIARALAADPKFMLLDEPFAGVDPISVGDIKDIIQTLKDRGIGVLITDHNVRETLAICERAYIVSEGSVIAEGTPQEILDNEQVRKVYLGDDFTV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(4QC2)
?
[Raw transfer]




ATP_B_5(4QC2)
?
[Raw transfer]




ATP_A_4(4P33)
LPTB_ECOLI
[Raw transfer]




ATP_B_9(4P33)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]




ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]




27 HHSearch 96.6866%-121 - C1 -4P32 6.8 LPTB_ECOLI
3 PsiBlast_PDB 96.6866%-121 - C1 -4P32 6.8 LPTB_ECOLI
4 PsiBlast_PDB 95.6366%-123 - C1 -4P33 8.8 LPTB_ECOLI
23 PsiBlast_CBE 94.8366%-122 - C1 -4P33 8.4 LPTB_ECOLI
21 PsiBlast_CBE 94.2766%-120 - C1 -4QC2 8.3 ?
22 PsiBlast_CBE 92.9766%-121 - C1 -4P32 7.7 LPTB_ECOLI
2 PsiBlast_PDB 92.8166%-114 - C1 -4QC2 8.2 ?
1 PsiBlast_PDB 92.3266%-133 - C1 -5X5Y - ? -
5 PsiBlast_PDB 91.7065%-118 - C1 -4P31 7.0 LPTB_ECOLI
6 PsiBlast_PDB 78.8158% -13 - C1 -4WBS - ? -
32 HHSearch 62.3534% -67 - C1 -1JI0 - ? -
7 PsiBlast_PDB 60.8434% -70 - C1 -1JI0 - ? -
34 HHSearch 60.1832%-110 * C1 *4YER - ? -
54 Fugue 58.1328% 1 - C1 -1Z47 - ? -
28 HHSearch 57.6326%-122 - C1 -3RLF - MALK_ECOLI -
15 PsiBlast_PDB 57.0227% -35 - C1 -1G6H - LIVG_METJA -
14 PsiBlast_PDB 55.0930%-104 - C1 -1Z47 - ? -
8 PsiBlast_PDB 54.9728% -54 - C1 -4YMS - ? -
12 PsiBlast_PDB 53.8928% -56 - C1 -4YMW - ? -
9 PsiBlast_PDB 52.4728% -57 - C1 -4YMT - ? -