@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VSK9: (2017-12-09 )
MSQQFDLVVIGGGPGGYEAAIRAAQLGFKVACIEKRIHNGKPSLGGTCLNVGCIPSKALLDSSHRYEDTVHHLADHGITTGEVNFDLAKLLARKDKIVDQLTGGIDQLLKGNGIEWLKGTGKLLAGKKVEFVPHEGETQILEPKYVILASGSVPVNIPVAPVDQDIIVDSTGALNFPEVPKRLGVIGAGVIGLELGSVWRRLGAEVVVFEAMDAFLPMADKALSKEYQKILTKQGLDIRIGAKVSGTEVNGREVTVKYTQGGEDKEQTFDKLIVCVGRKAYAEGLLAEDSGIKLTERGLVEVNDHCATSVEGVYAIGDLVRGPMLAHKAMEEGVMAVERIHGHAAQINYDTIISVIYTHPEAAWVGLTEEQAKEKGHEVKTGQFGFAVNGRALAAGEGAGFVKFVADEKTDRLLGMHVIGPAASDIVHQGMIALEFVSSVEDLQLMTFGHPTFSEVVHEAALAVDGRAIHAIQRKRK

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_4(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_B_5(5TR3)
?
[Raw transfer]




FAD_B_5(1V59)
DLDH_YEAST
[Raw transfer]




FAD_B_4(2EQ6)
?
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_B_6(2EQ7)
?
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_A_4(2EQ7)
?
[Raw transfer]




FAD_B_4(2EQ6)
?
[Raw transfer]




FAD_A_3(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_A_7(2YQU)
?
[Raw transfer]




FAD_B_8(2YQU)
?
[Raw transfer]




FAD_B_5(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_D_4(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_B_5(3URH)
?
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




FAD_B_4(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_B_4(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_C_3(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




FAD_B_11(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_A_3(4JDR)
DLDH_ECOLI
[Raw transfer]




EDO_B_7(3URH)
?
[Raw transfer]




EDO_A_9(5U25)
?
[Raw transfer]




1 PsiBlast_PDB 86.4063% -21 - C1 -5TR3 - ? -
21 PsiBlast_CBE 85.7363% -21 - C1 -5TR3 12.9 ?
32 PsiBlast_CBE 84.8061% -19 - C1 -1LPF 12.8 DLDH_PSEFL
4 PsiBlast_PDB 84.0461% -19 - C1 -5U8V - ? -
6 PsiBlast_PDB 83.9961% -20 - C1 -1LPF 12.8 DLDH_PSEFL
23 PsiBlast_CBE 83.8361% -20 - C1 -5U8W - ? -
86 PsiBlast_CBE 83.0943%-120 - C1 -1EBD 12.2 DLDH1_GEOSE
3 PsiBlast_PDB 82.8561% -16 - C1 -5U8U - DLDH2_PSEAE -
5 PsiBlast_PDB 82.6061% -17 - C1 -5U8W - ? -
28 PsiBlast_CBE 82.2661% -17 - C1 -5U8V - ? -
27 PsiBlast_CBE 82.2561% -18 - C1 -5U8V - ? -
26 PsiBlast_CBE 82.2561% -14 - C1 -5U8V - ? -
87 PsiBlast_CBE 82.0943%-123 - C1 -1EBD 12.6 DLDH1_GEOSE
31 PsiBlast_CBE 82.0261% -16 - C1 -5U8U - DLDH2_PSEAE -
118 HHSearch 81.7662% -15 - C1 -5U8U - DLDH2_PSEAE -
22 PsiBlast_CBE 81.7262% -18 - C1 -3LAD 12.6 DLDH_AZOVI
24 PsiBlast_CBE 81.6761% -15 - C1 -5U8W - ? -
25 PsiBlast_CBE 81.5261% -14 - C1 -5U8W - ? -
29 PsiBlast_CBE 81.2861% -14 - C1 -5U8U - DLDH2_PSEAE -
30 PsiBlast_CBE 81.0861% -18 - C1 -5U8U - DLDH2_PSEAE -
8 PsiBlast_PDB 79.2248% -77 - C1 -2YQU 13.3 ?
107 HHSearch 78.7547% -40 - C1 -3URH 11.9 ?
33 PsiBlast_CBE 78.5548% -75 - C1 -2YQU 13.1 ?
7 PsiBlast_PDB 77.4348% -73 - C1 -2EQ7 13.4 ?
108 HHSearch 76.9447% -35 - C1 -3URH 12.7 ?
34 PsiBlast_CBE 76.7248% -74 - C1 -2EQ7 13.4 ?
15 PsiBlast_PDB 76.5347% -35 - C1 -3URH 13.1 ?
16 PsiBlast_PDB 71.0243% 7 - C1 -1JEH 13.6 DLDH_YEAST
17 PsiBlast_PDB 70.3243% 9 - C1 -1V59 13.3 DLDH_YEAST
71 PsiBlast_CBE 69.8843% 8 - C1 -1V59 13.4 DLDH_YEAST
72 PsiBlast_CBE 69.6643% 6 - C1 -1JEH 13.8 DLDH_YEAST
113 HHSearch 69.2946% -22 - C1 -2EQ6 13.4 ?
95 PsiBlast_CBE 67.5038% -61 - C1 -4JDR 12.9 DLDH_ECOLI
94 PsiBlast_CBE 67.4338% -63 - C1 -4JDR 12.9 DLDH_ECOLI
110 HHSearch 66.9543% 12 - C1 -2QAE 12.8 DLDH_TRYCR
83 PsiBlast_CBE 66.5946% 5 - C1 -2EQ6 13.4 ?
18 PsiBlast_PDB 65.5546% 3 - C1 -2EQ6 13.4 ?
96 PsiBlast_CBE 65.0938% -24 - C1 -1LVL 11.8 DLDH1_PSEPU
84 PsiBlast_CBE 64.9442% 0 - C1 -2QAE 12.1 DLDH_TRYCR
85 PsiBlast_CBE 63.8542% 0 - C1 -2QAE 12.2 DLDH_TRYCR
109 HHSearch 63.7238% -25 - C1 -1LVL 11.9 DLDH1_PSEPU