@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VSL1: (2017-12-09 )
MSVLINKDTKVLVQGFTGKNGTFHSAQALDYGTKVVGGVTPGKGGTTHLDLPVFNTMKEAVRETNADASVIYVPAPFVLDSIVEAVDSGVGLIVVITEGVPTIDMLKAKRYLETNGNGTRLVGPNCPGVITPGECKIGIMPGHIHQPGRIGIISRSGTLTYEAVAQTTKLGLGQSTCIGIGGDPIPGMNQIEALQLFQDDPDTDAIIMIGEIGGTAEEEAAEFIKSNVTKPVVGYIAGVTAPKGKRMGHAGAIISGGQGTAEEKFAAFEKAGMAYTRSPAELGSTMLQVLKEKGLA

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COA_A_11(2NU7)
SUCD_ECOLI
[Raw transfer]




COA_D_10(1CQJ)
SUCD_ECOLI
[Raw transfer]




COA_A_11(2NU8)
SUCD_ECOLI
[Raw transfer]




COA_A_12(2NUA)
SUCD_ECOLI
[Raw transfer]




COA_A_9(1CQJ)
SUCD_ECOLI
[Raw transfer]




COA_A_3(5CAE)
SUCA_PIG
[Raw transfer]




COA_A_3(4XX0)
SUCA_PIG
[Raw transfer]




COA_A_9(1CQJ)
SUCD_ECOLI
[Raw transfer]




COA_U_21(1JLL)
SUCD_ECOLI
[Raw transfer]




COA_W_23(1JLL)
SUCD_ECOLI
[Raw transfer]




COA_A_9(1CQI)
SUCD_ECOLI
[Raw transfer]




COA_D_10(1CQI)
SUCD_ECOLI
[Raw transfer]




COA_G_7(2SCU)
SUCD_ECOLI
[Raw transfer]




COA_G_7(2SCU)
SUCD_ECOLI
[Raw transfer]




23 PsiBlast_CBE 96.1371% 0 - C- -1JKJ - SUCD_ECOLI -
1 PsiBlast_PDB 96.1371% 0 - C- -1JKJ - SUCD_ECOLI -
5 PsiBlast_PDB 92.9070%-101 - C3 -2NU7 8.8 SUCD_ECOLI
28 PsiBlast_CBE 92.6470%-107 - C3 -2NUA - SUCD_ECOLI -
26 PsiBlast_CBE 92.5870%-100 - C3 -2NU7 - SUCD_ECOLI -
6 PsiBlast_PDB 92.4370%-101 - C3 -2NU8 8.6 SUCD_ECOLI
22 PsiBlast_CBE 92.3671%-100 - C3 -1JLL 7.4 SUCD_ECOLI
34 HHSearch 92.2571% -99 - C3 -2NU8 - SUCD_ECOLI -
7 PsiBlast_PDB 92.1070%-107 - C3 -2NUA 7.4 SUCD_ECOLI
2 PsiBlast_PDB 91.7071%-102 - C3 -1JLL 7.0 SUCD_ECOLI
27 PsiBlast_CBE 91.6170% -99 - C3 -2NU8 - SUCD_ECOLI -
35 HHSearch 91.5671%-101 - C3 -1CQJ 8.2 SUCD_ECOLI
24 PsiBlast_CBE 91.3770%-101 - C3 -1CQJ 8.0 SUCD_ECOLI
4 PsiBlast_PDB 90.9270%-101 - C3 -1CQJ 8.2 SUCD_ECOLI
11 PsiBlast_PDB 90.7761% -81 - C3 -2FPG - SUCA_PIG -
21 PsiBlast_CBE 90.6871%-103 - C3 -1SCU - SUCD_ECOLI -
8 PsiBlast_PDB 90.3861% -84 - C3 -1EUC - SUCA_PIG -
9 PsiBlast_PDB 90.1461% -83 - C3 -4XX0 8.5 SUCA_PIG
10 PsiBlast_PDB 90.0361% -84 - C3 -5CAE 8.7 SUCA_PIG
3 PsiBlast_PDB 88.9070%-102 - C3 -1CQI 6.9 SUCD_ECOLI
25 PsiBlast_CBE 88.2570%-102 - C3 -1CQI 6.9 SUCD_ECOLI
55 Fugue 55.6967%-129 - C3 -2SCU 7.8 SUCD_ECOLI
56 Fugue 55.5166%-129 - C3 -2SCU 7.8 SUCD_ECOLI