@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VSN5: (2017-12-09 )
MKVQPNDYSKIYDIAVIGGGINGVGIANDAVGRGLSVFLCEKDDLASHTSSASSKLIHGGLRYLEYKEFRLVREALAEREVLLAKAPHIIKPMRFIMPHRPHLRPAWLIRAGLFFYDHLGKREKLLGSNRIYFKEDSPLKPAITRGFEYSDCTVDDARLVVLNALQAKEKGAKVVTRKRCVKAYRQQELWYLELQSGAEFYQVRAKAIVNAAGPWVEEIISENLNLSSPYQIRLIQGSHIVVPKLYDCHKAFIMQNEDRRIVFAIPYLEKYTLIGTTDQEYTGDPQKVEITDVEIDYLLTVTNSHFKKQLTRADIVSQYSGVRALCDDESDNPSAITRDYTLALQAEDKTTPLLSVFGGKITTYRKLAEAALEHLAPFFNDMAEEWTADDPLPGAENWTTLEDLINQIKTRVSGISDSLANRWAHAYGTRVWNMLKERNAIEQLGQHFGHDLFECEVRYLCEYEWAHTAEDILWRRSKLGLAFDEKQVKVLEAYLSERRLKDDAA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_18(2R45)
GLPD_ECOLI
[Raw transfer]



FAD_B_16(2QCU)
GLPD_ECOLI
[Raw transfer]



FAD_A_20(2R46)
GLPD_ECOLI
[Raw transfer]



FAD_A_14(2R4E)
GLPD_ECOLI
[Raw transfer]



FAD_B_16(2QCU)
GLPD_ECOLI
[Raw transfer]



FAD_A_11(2R4J)
GLPD_ECOLI
[Raw transfer]



FAD_B_15(2R4E)
GLPD_ECOLI
[Raw transfer]



FAD_A_15(2QCU)
GLPD_ECOLI
[Raw transfer]



13P_A_16(2R4E)
GLPD_ECOLI
[Raw transfer]
54 HHSearch 77.3355% -15 - C1 -2QCU 14.7 GLPD_ECOLI
4 PsiBlast_PDB 70.4353% -8 - C1 -2R4E 11.9 GLPD_ECOLI
3 PsiBlast_PDB 70.1353% -9 - C1 -2R46 13.2 GLPD_ECOLI
2 PsiBlast_PDB 70.0353% -6 - C1 -2R45 12.0 GLPD_ECOLI
5 PsiBlast_PDB 69.7953% -7 - C1 -2R4J 12.6 GLPD_ECOLI
21 PsiBlast_CBE 69.7153% -4 - C1 -2R4E 12.0 GLPD_ECOLI
24 PsiBlast_CBE 69.3453% -4 - C1 -2QCU 13.3 GLPD_ECOLI
23 PsiBlast_CBE 69.0053% -8 - C1 -2R45 - GLPD_ECOLI -
1 PsiBlast_PDB 68.6453% -5 - C1 -2QCU 11.3 GLPD_ECOLI
22 PsiBlast_CBE 68.4553% -4 - C1 -2R46 - GLPD_ECOLI -
55 HHSearch 57.3829% 9 - C1 -2RGH - ? -
53 HHSearch 51.5030% 4 - C1 -3DA1 - ? -
8 PsiBlast_PDB 50.0327% 20 - C1 -2RGO - ? -
6 PsiBlast_PDB 49.5829% 20 - C1 -2RGH - ? -
7 PsiBlast_PDB 44.5630% 28 - C1 -3DA1 - ? -
9 PsiBlast_PDB 42.5121% -20 - C1 -3DME - ? -
50 PsiBlast_CBE 38.9441%-244 - C1 -2BXR - AOFA_HUMAN -
64 HHSearch 38.7417% -23 - C1 -4YSH - GLYOX_GEOKA -
51 PsiBlast_CBE 38.1841%-204 - C1 -2Z5X - AOFA_HUMAN -
49 PsiBlast_CBE 38.1741%-250 - C1 -2BXR - AOFA_HUMAN -