@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VSN6: (2017-12-09 )
MTTVNAPEFVRHPKLIAWVEEIANLTKPAKIEWCDGSEEEYQRLIDLMIANGTMQKLNQEKHPGSYLANSDPSDVARVEDRTYICSQNKEDAGATNNWEDPAVMREKLNGLFEGSMKGRTMYVVPFSMGPLGSHIAHIGIELTDSPYVAVSMRKMARMGKAVYDVLGTDGEFVPCVHTVGAPLAEGQKDVAWPCNPEKYIVHYPETREIWSFGSGYGGNALLGKKCLALRIASVMGREQGWLAEHMLILGVTNPQGEKHYIAAAFPSACGKTNFAMLIPPAGYEGWKIETVGDDIAWIKPGEDGRLYAINPEAGFFGVAPGTNTKTNPNCMATLHKDVIYTNVAVTDDGQVWWEGLSKEVPANLTNWKGQPHVNGEKAAHPNARFTVAAGQCPSIDADWENPAGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAATMGSETTAAAVGQQGIVRRDPFAMLPFAGYNMADYFDHWLNLGAKVSEKAEASGNKLPKIFNVNWFRRDAEGNFVWPGFGQNMRVLEWIIDRCEGRANAVETPIGFVPTYEDLNWEGTEFTKEQFDLITNQDKDQWVTEIESHTELFNKLGERLPKALKERQAALLEAVKTGF

Atome Classification :

(64 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_2(4GNQ)
PCKGC_RAT
[Raw transfer]




GTP_A_4(5FH2)
PCKGC_RAT
[Raw transfer]




GTP_A_2(4GNO)
PCKGC_RAT
[Raw transfer]




GTP_A_2(4GMU)
?
[Raw transfer]




GTP_A_5(4OX2)
?
[Raw transfer]




GTP_A_4(5FH1)
?
[Raw transfer]




GTP_A_5(5V9F)
PCKGC_RAT
[Raw transfer]




GCP_A_5(1KHB)
PCKGC_HUMAN
[Raw transfer]




GTP_A_4(5FH0)
PCKGC_RAT
[Raw transfer]




GCP_A_5(1KHB)
PCKGC_HUMAN
[Raw transfer]




GTP_A_4(5V9G)
PCKGC_RAT
[Raw transfer]




GTP_A_5(5FH4)
PCKGC_RAT
[Raw transfer]




GTP_A_5(5V97)
PCKGC_RAT
[Raw transfer]




GTP_A_6(3DT2)
PCKGC_RAT
[Raw transfer]




GTP_C_12(3DT4)
PCKGC_RAT
[Raw transfer]




GTP_A_2(4GMU)
?
[Raw transfer]




GTP_B_12(4OX2)
?
[Raw transfer]




GTP_A_3(4GMZ)
?
[Raw transfer]




GTP_A_2(4GMM)
PCKGC_RAT
[Raw transfer]




GTP_A_3(3MOF)
PCKGC_RAT
[Raw transfer]




GTP_A_2(4YW9)
?
[Raw transfer]




GTP_A_11(3DT4)
PCKGC_RAT
[Raw transfer]




PPF_B_8(2RK8)
PCKGC_RAT
[Raw transfer]




PPF_A_7(2RK8)
PCKGC_RAT
[Raw transfer]




GTP_A_2(4GNM)
?
[Raw transfer]




GTP_A_5(5FH3)
?
[Raw transfer]




NTM_A_5(4YWD)
?
[Raw transfer]




3PP_A_5(2RKD)
PCKGC_RAT
[Raw transfer]




FMT_B_11(2RK8)
PCKGC_RAT
[Raw transfer]




PEP_A_4(1KHF)
PCKGC_HUMAN
[Raw transfer]




PEP_A_5(2QZY)
?
[Raw transfer]




PEP_B_7(2QZY)
?
[Raw transfer]




1WD_A_5(4YW8)
PCKGC_RAT
[Raw transfer]




GDP_B_14(5V9H)
?
[Raw transfer]




GDP_A_8(5V9H)
PCKGC_RAT
[Raw transfer]




SAT_A_6(2RKE)
PCKGC_RAT
[Raw transfer]




PEP_B_6(2GMV)
PCKGC_HUMAN
[Raw transfer]




PEP_A_4(4WPT)
PCKG_MYCTA
[Raw transfer]




PEP_A_4(4WPT)
PCKG_MYCTA
[Raw transfer]




1WD_A_7(4YW9)
?
[Raw transfer]




GNP_A_2(4WL8)
PCKG_MYCTA
[Raw transfer]




EPE_A_5(5FH2)
PCKGC_RAT
[Raw transfer]




GDP_A_2(4GMW)
PCKGC_RAT
[Raw transfer]




GDP_B_10(3MOH)
PCKGC_RAT
[Raw transfer]




1PE_A_7(2FAF)
PCKGM_CHICK
[Raw transfer]




GDP_A_3(3MOH)
PCKGC_RAT
[Raw transfer]




GDP_A_2(4WPU)
PCKG_MYCTA
[Raw transfer]




EPE_A_5(5FH1)
?
[Raw transfer]




GDP_A_4(5FH5)
PCKGC_RAT
[Raw transfer]




GDP_A_2(5I67)
PCKG_MYCTA
[Raw transfer]




GDP_A_2(4R43)
PCKG_MYCTU
[Raw transfer]




GDP_A_5(4GNL)
PCKGC_RAT
[Raw transfer]




GDP_A_2(4RCG)
PCKG_MYCTU
[Raw transfer]




GDP_A_2(4GNP)
?
[Raw transfer]




GDP_A_2(4WOU)
PCKG_MYCTA
[Raw transfer]




1WD_A_9(4YW8)
PCKGC_RAT
[Raw transfer]




1WD_C_13(4YWB)
?
[Raw transfer]




1WD_A_7(4YWB)
PCKGC_RAT
[Raw transfer]




UN8_A_7(2GMV)
PCKGC_HUMAN
[Raw transfer]




FTB_A_5(1NHX)
PCKGC_HUMAN
[Raw transfer]




TSX_A_4(1M51)
PCKGC_HUMAN
[Raw transfer]




79 HHSearch 81.3357% -36 - C6 -4WPT 2.9 PCKG_MYCTA
80 HHSearch 81.2357% -36 - C6 -4WIU - PCKG_MYCTA -
10 PsiBlast_PDB 80.6857% -40 - C6 -5I67 8.5 PCKG_MYCTA
8 PsiBlast_PDB 77.6856% -5 - C6 -4WPV - PCKG_MYCTA -
4 PsiBlast_PDB 76.7056% 23 - C6 -4WL8 8.9 PCKG_MYCTA
6 PsiBlast_PDB 76.5856% 23 - C6 -4WPT 2.9 PCKG_MYCTA
81 HHSearch 76.5251% -46 - C6 -2ZCI - PCKG_CORGL -
3 PsiBlast_PDB 76.3156% 24 - C6 -4WIE - PCKG_MYCTA -
2 PsiBlast_PDB 76.1456% 23 - C6 -4WIU - PCKG_MYCTA -
1 PsiBlast_PDB 76.1256% 25 - C6 -4R43 9.1 PCKG_MYCTU
7 PsiBlast_PDB 76.1156% 23 - C6 -4WPU 7.2 PCKG_MYCTA
82 HHSearch 76.0151% -48 - C6 -2ZCI - PCKG_CORGL -
11 PsiBlast_PDB 75.9250% -48 - C6 -2ZCI - PCKG_CORGL -
9 PsiBlast_PDB 74.9156% 27 - C6 -4RCG 7.8 PCKG_MYCTU
5 PsiBlast_PDB 74.7056% 39 - C6 -4WOU 8.7 PCKG_MYCTA
43 PsiBlast_CBE 74.3251% 4 - C6 -2RK8 3.6 PCKGC_RAT
48 PsiBlast_CBE 74.3151% 5 - C6 -2QF2 - PCKGC_RAT -
19 PsiBlast_PDB 74.3151% 5 - C6 -5V97 9.5 PCKGC_RAT
30 PsiBlast_CBE 74.2751% 2 - C6 -4YW9 10.2 ?
53 PsiBlast_CBE 74.2251% 3 - C6 -5FH2 9.7 PCKGC_RAT
28 PsiBlast_CBE 74.2151% 7 - C6 -4OX2 10.5 ?
54 PsiBlast_CBE 74.1651% 4 - C6 -5FH1 9.4 ?
66 PsiBlast_CBE 74.0750% 2 - C6 -4GNO 9.6 PCKGC_RAT
55 PsiBlast_CBE 74.0651% 2 - C6 -5FH3 9.4 ?
40 PsiBlast_CBE 74.0551% 5 - C6 -2RKD 2.8 PCKGC_RAT
39 PsiBlast_CBE 73.9851% 6 - C6 -2RKE 3.5 PCKGC_RAT
64 PsiBlast_CBE 73.9650% 2 - C6 -4GNQ 9.6 PCKGC_RAT
60 PsiBlast_CBE 73.9551% 6 - C6 -3MOF 8.2 PCKGC_RAT
36 PsiBlast_CBE 73.9551% 6 - C6 -3DT4 10.6 PCKGC_RAT
56 PsiBlast_CBE 73.8651% 7 - C6 -5FH0 9.9 PCKGC_RAT
51 PsiBlast_CBE 73.7951% 7 - C6 -5FH5 7.4 PCKGC_RAT
44 PsiBlast_CBE 73.7851% 6 - C6 -2RK8 4.0 PCKGC_RAT
52 PsiBlast_CBE 73.7251% 4 - C6 -5FH4 9.9 PCKGC_RAT
65 PsiBlast_CBE 73.6350% 5 - C6 -4GNP 8.6 ?
20 PsiBlast_PDB 73.6351% 7 - C6 -5V9F 9.4 PCKGC_RAT
62 PsiBlast_CBE 73.5950% 8 - C6 -4GNL 8.7 PCKGC_RAT
26 PsiBlast_CBE 73.5951% 6 - C6 -4YWB 3.6 ?
24 PsiBlast_CBE 73.5651% 8 - C6 -5V9G 10.0 PCKGC_RAT
58 PsiBlast_CBE 73.5451% 4 - C6 -3MOH 7.9 PCKGC_RAT
38 PsiBlast_CBE 73.4451% 7 - C6 -3DT2 10.6 PCKGC_RAT
61 PsiBlast_CBE 73.4150% 5 - C6 -4GNM 9.5 ?
25 PsiBlast_CBE 73.2851% 6 - C6 -4YWD 2.6 ?
15 PsiBlast_PDB 73.2250% 7 - C6 -1M51 8.9 PCKGC_HUMAN
57 PsiBlast_CBE 73.1551% 5 - C6 -3MOH 8.3 PCKGC_RAT
17 PsiBlast_PDB 73.1450% 3 - C6 -2GMV 10.8 PCKGC_HUMAN
83 HHSearch 73.0752% 7 - C6 -4GMU 9.8 ?
71 PsiBlast_CBE 73.0648% -4 - C6 -2QZY 4.1 ?
29 PsiBlast_CBE 73.0351% 6 - C6 -4OX2 9.7 ?
23 PsiBlast_CBE 73.0351% 7 - C6 -5V9H 8.8 PCKGC_RAT
27 PsiBlast_CBE 73.0051% 8 - C6 -4YWB 3.0 PCKGC_RAT
68 PsiBlast_CBE 72.9550% 5 - C6 -4GMU 9.8 ?
77 PsiBlast_CBE 72.9348% -4 - C6 -2FAF 3.5 PCKGM_CHICK
37 PsiBlast_CBE 72.9351% 7 - C6 -3DT4 10.8 PCKGC_RAT
22 PsiBlast_CBE 72.9351% 7 - C6 -5V9H 8.6 ?
69 PsiBlast_CBE 72.9250% 4 - C6 -4GMM 9.7 PCKGC_RAT
63 PsiBlast_CBE 72.9050% 6 - C6 -4GMZ 9.2 ?
16 PsiBlast_PDB 72.8450% 6 - C6 -1NHX 9.7 PCKGC_HUMAN
67 PsiBlast_CBE 72.7250% 5 - C6 -4GMW 7.0 PCKGC_RAT
13 PsiBlast_PDB 72.3250% 9 - C6 -1KHF 3.9 PCKGC_HUMAN
31 PsiBlast_CBE 72.3051% 6 - C6 -4YW8 3.0 PCKGC_RAT
12 PsiBlast_PDB 72.1050% 9 - C6 -1KHB 9.8 PCKGC_HUMAN
70 PsiBlast_CBE 72.0548% 2 - C6 -2QZY 3.9 ?
21 PsiBlast_CBE 71.9550% 3 - C6 -2GMV 2.8 PCKGC_HUMAN
100 Fugue 71.1151% 30 * C6 *1KHB 9.8 PCKGC_HUMAN